DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4565 and Setdb2

DIOPT Version :10

Sequence 1:NP_001097743.1 Gene:CG4565 / 41303 FlyBaseID:FBgn0037841 Length:269 Species:Drosophila melanogaster
Sequence 2:NP_001307649.1 Gene:Setdb2 / 239122 MGIID:2685139 Length:697 Species:Mus musculus


Alignment Length:467 Identity:86/467 - (18%)
Similarity:129/467 - (27%) Gaps:242/467 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LESVLMP----SDGSK--EFKFLAD--------EYNSVLLNPCHCKGACENSEVCA-------HG 65
            :|||.:|    .|.||  .||:...        .::::..:.|.|...|.:.:.||       :.
Mouse   238 VESVSIPFCNEIDNSKLPRFKYRNTVWPRIYHLNFSNMFSDSCDCSEGCIDIKKCACLQLTAKNA 302

  Fly    66 GQYEFTEDGS------ELILRNSANPVIECNDMCKCCRNTCSNRLVYSGPRKHLEIFDSPVYGSK 124
            .....:.||.      :.:.|.....:.|||.:|||.:..|.||::..|.|..|::|.|...| .
Mouse   303 KACPLSSDGECAGYKYKRLQRLIPTGIYECNLLCKCNKQMCQNRVIQHGVRVRLQVFKSEKKG-W 366

  Fly   125 GLRTTAKITKGGYICEYAGELL--TVPEARSRLHDNEKLGLMNYILVLNEYTSDKKQQV------ 181
            |:|....|.||.::|.|:|.||  ..|| ::.:.:|   |.....:|.|.::..:|.:|      
Mouse   367 GVRCLDDIDKGTFVCIYSGRLLRRATPE-KTNIGEN---GREQQHIVKNSFSKKRKLEVVCSDCD 427

  Fly   182 ----------------------------------------------------------------- 181
                                                                             
Mouse   428 AHCDSPKAEDCPPKLSGDLKEPAVEMNHRNISRTQHHSVIRRTKSKTTVFHYSEKNMGFVCSDSA 492

  Fly   182 ---------------------------------------------------------------TI 183
                                                                           ||
Mouse   493 APEDKNGFKPAQEHVNSEARRAHEDLSSNPAGDSEDTQLTESDVIDITASREDSAPAYRCKHATI 557

  Fly   184 VD----------------------------------PSRR------------------------G 190
            ||                                  ||.|                        |
Mouse   558 VDRKDTKQVLEVPGKKSQEEEPAASQSQQALCDEELPSERTKIPSASLMQLSKESLFLLDASKEG 622

  Fly   191 NIGRYLNHSCEPNCHIAAVRI---DCPIPKIGIFAARDIAAKEELCFHYGGEGQYKKMTGGKT-- 250
            |:||:|||||.||..:..|.:   |...|.:..|..|.:.|:.||.:.||.|       .|.|  
Mouse   623 NVGRFLNHSCCPNLWVQNVFVETHDRNFPLVAFFTNRYVKARTELTWDYGYE-------AGATPA 680

  Fly   251 ----CLCGASKC 258
                |.||.:||
Mouse   681 KEILCQCGFNKC 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4565NP_001097743.1 SET_SETMAR 16..267 CDD:380942 86/467 (18%)
Setdb2NP_001307649.1 HMT_MBD 152..212 CDD:238689
SET 210..696 CDD:394802 86/467 (18%)
SET 365..>435 CDD:459965 19/74 (26%)
Blue background indicates that the domain is not in the aligned region.

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