DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad86C and shg

DIOPT Version :9

Sequence 1:NP_001247033.1 Gene:Cad86C / 41302 FlyBaseID:FBgn0261053 Length:1949 Species:Drosophila melanogaster
Sequence 2:NP_476722.1 Gene:shg / 37386 FlyBaseID:FBgn0003391 Length:1507 Species:Drosophila melanogaster


Alignment Length:1500 Identity:293/1500 - (19%)
Similarity:469/1500 - (31%) Gaps:572/1500 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 HHHHHQQQHNHQNQQMQHHWPSRLGPIGPWLGAMTAYRLLTISLLIGILCPHHVQGADPKFDPTT 146
            |.:..|||.:.|:::.......||.|....||.:.|     ||||...|..|  ...|..|....
  Fly    25 HLNPAQQQTHQQHKRKCRDLGRRLIPARLLLGVIVA-----ISLLSPALALH--SPPDKNFSGDN 82

  Fly   147 RMRLVLVPADAQVNSVIYRLRATDEEFDYPLTFEFVGDASASTVKVESLPCTKYNSVCQANIVLQ 211
            |.     ||.........:::....|..|.||.|.|.......:                     
  Fly    83 RK-----PAFKNCAGYAPKVKEEQPENTYVLTVEAVDPDPDQVI--------------------- 121

  Fly   212 RRLEPGRYYDFQVSVKDTKGGMTTQLCSITATNFTTPHDLIFPHKPGIIMIPEDAKRGTELDYVI 276
                  ||                   ||..:.|..|...|.| ..|:|.          ..:..
  Fly   122 ------RY-------------------SIVQSPFERPKFFINP-STGVIF----------TTHTF 150

  Fly   277 ARKNPLFQKPVYLELWGSPLFAIRQKIVSSETTEGTVFLLGPLDFEKQAMYHLTILANDAYAEPG 341
            .|..|:.:|.|::                  |.:.|...|.|||  ....:::||          
  Fly   151 DRDEPIHEKFVFV------------------TVQATDNGLPPLD--DVCTFNVTI---------- 185

  Fly   342 QDSRNIAGMEIVVIVQDVQDQPPVFTSAPPVTKLPPGILPGDKILQVHAEDGDKGNPREVRYGLV 406
                           :|:.|..|.|..|.....:.....|...::.:.|.|.|.||...|.|.::
  Fly   186 ---------------EDINDNAPAFNKARYDESMSENAQPDAVVMTISASDFDDGNNSLVEYEIL 235

  Fly   407 SENNPFTSFFDINETSGEIFLMRPL-----EDIAFITH----VGDP-------VLLTVIAEEVKV 455
            .|.:  ..:|.|::.||.|:|.||:     :..|.|..    |.||       |.:.|:...:| 
  Fly   236 RERD--FQYFKIDKESGIIYLKRPIDKRPGQSYAIIVRAYNVVPDPPQDAQIEVRIRVVESSIK- 297

  Fly   456 GRDEPPALASTVQLAFFLPDRTNSPPYFENDHYVSRVDENAPHGTALTFVDPYVPRVYDDDTGKN 520
                ||:..:.:....:|.:...:   |.:.....|...|.|.       .|.|  :::.:||:.
  Fly   298 ----PPSFVNPIDTPIYLKENLKN---FTHPIATLRAVSNMPD-------KPEV--IFELNTGRT 346

  Fly   521 GVFSLTLLNNNGTFEISPNVAERSAGFLIRVRDNSMLDYEQQQSVQFQILAQ---ELGPATNLSA 582
                 ...|:..||..:      ..|..:.:.....||||........::.:   |||...    
  Fly   347 -----EQTNSKNTFVFN------QIGNEVTISLGKTLDYEAITDYTLTMIVRNTHELGTEH---- 396

  Fly   583 LVNVTVYINDVNDNAPVFEQPAYSVELPENMTAGTKVVQVLATDPDSGLGGKVRYTAILGYLNTS 647
              .:.:.:.|||||.|.:.: ..|..:.||...||.|:||.|.|.|                .||
  Fly   397 --QIKIQVEDVNDNIPYYTE-VKSGTILENEPPGTPVMQVRAFDMD----------------GTS 442

  Fly   648 LN---------------LDAETGLITVSTNKHGFDREVMPEYHLYVEARDM-------DGEGNRA 690
            .|               :|..||.||..|.   ||||....|::.|.|.|.       :||.||.
  Fly   443 ANNIVSFELADNREYFTIDPNTGNITALTT---FDREERDFYNVKVIASDNSPSSLFDNGEPNRG 504

  Fly   691 QVPLIIKLIDVNDETPIFDKDLYEFILTHDLM--GFTTTAVIH--AEDKDATAPNNEVRYEIING 751
            .....|.:.|.||..|.|.:|.|   |...|:  ..|.|.||.  |||:|..   :::.|.|.:|
  Fly   505 HQVFRISIGDKNDHKPHFQQDKY---LAERLLEDANTNTEVIEVKAEDEDNA---SQILYSIESG 563

  Fly   752 NYDNQFVLDKVTGELTVREKIHLRSKKNAKTRRRRQAGSDDEDTDIFILTARAYDLGVPVRFSTT 816
            |..:.|.:...||::||.:|:                  |.|....:.|..||:| |:...::|.
  Fly   564 NVGDAFKIGLKTGKITVNQKL------------------DYETITEYELKVRAFD-GIYDDYTTV 609

  Fly   817 TIRVYPPESRKRSVKFVVPGHNPDKAKTEETLSALSGGKVYIHNIRPLSPDEPGAKD----IPAG 877
            .|::.....            ||...|.:.:::.|               :|....|    :.|.
  Fly   610 VIKIEDVND------------NPPVFKQDYSVTIL---------------EETTYDDCILTVEAY 647

  Fly   878 NPGIKERSVVTATVIYDSSSVVDISEIQQRLSHHNNSYAIMPQDTSSTDTLTPLQTQYKAENKVL 942
            :|.||:|:.       |...|..|        |.|:.                  .::..:|   
  Fly   648 DPDIKDRNA-------DQHIVYSI--------HQNDG------------------NRWTIDN--- 676

  Fly   943 FWLLILLATLVALTILILLLCCICSWCPLYGAATKRIVNISRTEDDVHLVHREMANGKQTKSVQV 1007
                                    |.|          :.:.:|.|      |:..||.:...|.:
  Fly   677 ------------------------SGC----------LRLVKTLD------RDPPNGHKNWQVLI 701

  Fly  1008 AEWMGRRDAWSAEKPPDTRTKPTRWEFHDGREQLDEDVGRGQDIGEGDRRHIQSAEEQQRRVRIK 1072
                                           :..||| |.|..:            ...:.|.: 
  Fly   702 -------------------------------KANDED-GVGTTV------------STVKEVTV- 721

  Fly  1073 HNRTAKDDLHLNFHNSRTNLINDRDVYMEDVIENRDLAGDREHITRTRVNRQEYARRKQYDSEVR 1137
               |.||     .:::...|||:..||.:   |||:..    |:.:.:.|  :|           
  Fly   722 ---TLKD-----INDNAPFLINEMPVYWQ---ENRNPG----HVVQLQAN--DY----------- 758

  Fly  1138 HIDD-----------DSMRRHEIDRGSDIDFNTAHNSL----KSKRELFI----------KDGNV 1177
              ||           ||....:|.....:|.:..|.::    ::::|.||          :...|
  Fly   759 --DDTPGAGNFTFGIDSEATPDIKTKFSMDGDYLHANVQFDREAQKEYFIPIRISDSGVPRQSAV 821

  Fly  1178 EILQLMTRDKTRDGLNLDDDNIYV-----NVPLKPAG--------------------NLSHPQLL 1217
            .||.|:..|...:.::.....|::     ..|....|                    :|.|.|..
  Fly   822 SILHLVIGDVNDNAMSEGSSRIFIYNYKGEAPETDIGRVFVDDLDDWDLEDKYFEWKDLPHDQFR 886

  Fly  1218 MVDNTGKEILMRRFIEEQPDGKQIIREHYQIVPG-------ATYIQSMPNEVQQGSTLKGDTFPL 1275
            :..:||...::....|.:.|...::.|....||.       ...::.:|.|.            :
  Fly   887 LNPSTGMITMLVHTAEGEYDLSFVVTEDSMFVPRHSVDAYVTVVVRELPEEA------------V 939

  Fly  1276 GKSGPNSIVYSQLEPEVKVIHTQPVQAGEGVSLDQQMQ--------PAVSN-------QSLTHEL 1325
            .|||  ||.:..:..|..:...:..|:.:.:||..::|        .:|||       |:..|.|
  Fly   940 DKSG--SIRFINVTKEEFISVPRDFQSPDALSLKDRLQLSLAKLFNTSVSNVDVFTVLQNENHTL 1002

  Fly  1326 ----------------------EHSLKQQNALLRQILM--------EKEKLENAYTQ--HEVAL- 1357
                                  ::..:.:|.|..|:||        ||.|.|.:.|.  |:.:: 
  Fly  1003 DVRFSAHGSPYYAPEKLNGIVAQNQQRLENELDLQMLMVNIDECLIEKFKCEESCTNELHKSSVP 1067

  Fly  1358 -----ETQSLPGQSMAIGTQTDCDAGTQTEGFDGVLDPEISLAKPSRRRARS-------ENDESM 1410
                 .|.|..|.:..:..|..|:|                   |..||..:       |||...
  Fly  1068 YMIYSNTTSFVGVNAFVQAQCVCEA-------------------PLMRRCLNGGSPRYGENDVCD 1113

  Fly  1411 SEDGY 1415
            ..||:
  Fly  1114 CIDGF 1118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad86CNP_001247033.1 Cadherin_repeat 260..361 CDD:206637 14/100 (14%)
Cadherin_repeat 372..469 CDD:206637 27/112 (24%)
Cadherin_repeat 487..596 CDD:206637 21/111 (19%)
Cadherin_repeat 605..703 CDD:206637 34/119 (29%)
Cadherin_repeat 728..820 CDD:206637 25/93 (27%)
shgNP_476722.1 Cadherin_repeat 93..191 CDD:206637 29/199 (15%)
Cadherin_repeat 200..292 CDD:206637 23/93 (25%)
CA 332..410 CDD:214520 21/103 (20%)
Cadherin_repeat 417..518 CDD:206637 35/119 (29%)
Cadherin_repeat 531..619 CDD:206637 28/121 (23%)
Cadherin_repeat 627..729 CDD:206637 31/245 (13%)
Cadherin_repeat 736..834 CDD:206637 23/119 (19%)
LamG 1127..1294 CDD:238058
Cadherin_C 1358..1489 CDD:279398
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24026
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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