DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cad86C and cdh-9

DIOPT Version :9

Sequence 1:NP_001247033.1 Gene:Cad86C / 41302 FlyBaseID:FBgn0261053 Length:1949 Species:Drosophila melanogaster
Sequence 2:NP_510685.2 Gene:cdh-9 / 186608 WormBaseID:WBGene00000401 Length:623 Species:Caenorhabditis elegans


Alignment Length:598 Identity:123/598 - (20%)
Similarity:204/598 - (34%) Gaps:217/598 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   488 YVSRVDENAPHGTALTFVDPYVPRVYDDDTGKNGVFSLTLLNNNGTFEISPNVAERSAGFLIRV- 551
            |:|..::..|.....|     :|  ::..|.|.....|.::..|...::.|.    |...:::. 
 Worm    32 YLSAFEDLKPGNVIGT-----LP--FESQTSKETDVELRVVKGNELVDVKPG----SHDLILKKT 85

  Fly   552 --RDNSMLDYEQQQSVQFQILAQELGPATNLSAL-VNVTVYINDVNDNAPVFEQPAYSVELPENM 613
              ||..:..:|.....:...|      .|:.|.| ::|.|.:.|:|||||||:...|.|::.|.:
 Worm    86 LDRDEGVGKFEAVVECRSSNL------DTDFSQLNISVFVTVKDINDNAPVFDSAEYFVDIKEEL 144

  Fly   614 TAGTKV-VQVLATDPDS-GLGGKVRYTAILGYLNTSLNL-DAETGLITVSTNKHGFDREVMPEYH 675
            ..||.| ....|||.|. |....|:||.:.|..:..|.: |....:||:   |...:.|.:.::.
 Worm   145 PTGTIVFTDFEATDNDQPGPNSFVQYTIVAGPHSHFLEIPDPFKPVITI---KDRINYEEIKKFS 206

  Fly   676 LYVEARDMDGEGNRAQVPLIIKLIDVNDETPIF-------------------------DKDLYEF 715
            :.:||||.......:.|||.:.::||||..|.|                         |.|....
 Worm   207 VEIEARDQGEPSLASTVPLHVTIVDVNDLLPRFKHSHYTAKSQKNGVLVFEPEAISAQDGDRLNA 271

  Fly   716 ILTHDLMG---------------------------FTTTAVIHAEDKDATA-------------- 739
            .|...|.|                           |.|.:.....::::||              
 Worm   272 SLIFSLSGELSEHFAIDNDGSIRSITPNPPQRATFFVTASEREDTERNSTAILSIRLQSSLAFQH 336

  Fly   740 --------PNNEVRYEIIN--GNYDNQFVL-------------DKVTGELTVREKIHLRSKKNAK 781
                    |...:...:|.  .|.:|...|             |:|:|.:.:|:|:.       |
 Worm   337 NTYSTTISPTTPIGSTVITVVANSENNTPLTYSLLADTNTVSIDEVSGNVVLRKKLE-------K 394

  Fly   782 TRRRRQAGSDDED---TDIFILTARAYDLGVPVRFSTTTIRVYPPESRKRSVKFVVPGHNPDKAK 843
            ........||.|:   |.:.::||.:                  .||.:..:||       :|.:
 Worm   395 PETLNVTASDGENVVSTALHLMTANS------------------EESCRSPIKF-------EKFE 434

  Fly   844 TEETLSALSGGKVYIHNIRPLSPDEPGAKDIPAGNPGIKERSVVTATVIYDSSSVVDISEIQQRL 908
            .:.|:     ||:.:                         ..||.||    |.:...|:.|   |
 Worm   435 YKMTI-----GKLNV-------------------------LGVVNAT----SRTGTKITYI---L 462

  Fly   909 SHHNNSYAIMPQDTSSTDTLTP---LQ------------------TQYKAENKVLFWLLILLATL 952
            .:.||.:.|   ||:....|.|   ||                  |:...:|..     .:|.:.
 Worm   463 MNMNNDFEI---DTNGVVKLLPKARLQCKVCELIVVAKSGTQMAITKINVDNPA-----FVLHST 519

  Fly   953 VALTILILLLCCI 965
            .|||:|||::.|:
 Worm   520 TALTLLILIILCL 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cad86CNP_001247033.1 Cadherin_repeat 260..361 CDD:206637
Cadherin_repeat 372..469 CDD:206637
Cadherin_repeat 487..596 CDD:206637 22/111 (20%)
Cadherin_repeat 605..703 CDD:206637 30/100 (30%)
Cadherin_repeat 728..820 CDD:206637 19/131 (15%)
cdh-9NP_510685.2 E_set <80..129 CDD:298831 13/54 (24%)
Cadherin_repeat 135..234 CDD:206637 30/101 (30%)
Cadherin_repeat 338..>405 CDD:206637 12/73 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7733
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X20
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.950

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