DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mcm5 and yifB

DIOPT Version :10

Sequence 1:NP_524308.2 Gene:Mcm5 / 41296 FlyBaseID:FBgn0017577 Length:733 Species:Drosophila melanogaster
Sequence 2:NP_418214.2 Gene:yifB / 948282 ECOCYCID:EG11260 Length:506 Species:Escherichia coli


Alignment Length:567 Identity:109/567 - (19%)
Similarity:189/567 - (33%) Gaps:165/567 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 AASGISAKATRMSIQCLSCSTVIPNL---------------KVNPGL--EGYALPRKCNT----- 194
            ||.|::|....:.:.   .|..:|.|               :|...:  .||..|.|..|     
E. coli    10 AALGVNAPPITVEVH---ISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAP 71

  Fly   195 ----EQAGRPKCPLDPFFIMPDKCKCVDFQTLKLQELPDFVPQGEIPRHLQLFCDRSLCERVVPG 255
                ::.||...|:....:...       :.|...:|.::...||:.....|        |.|||
E. coli    72 ADLPKEGGRYDLPIAIALLAAS-------EQLTANKLDEYELVGELALTGAL--------RGVPG 121

  Fly   256 NRVLIQGIYSIRKVGKPSRRDGREKAVVGVRAPYMRVVGITVDSEG-AGAISRYSNITSD----- 314
                  .|.|..:..|..|:                 :.:..|:|. .|.|:....:.:|     
E. coli   122 ------AISSATEAIKSGRK-----------------IIVAKDNEDEVGLINGEGCLIADHLQAV 163

  Fly   315 ----EEEHFRRMAASGDIYERLSQSLAPSIFGSRDIKKAITCMLFGGSRKRLPDGLCRRGDINVL 375
                |.:|........|...|..|.....:.|....|:.:.....||.              |:|
E. coli   164 CAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGH--------------NLL 214

  Fly   376 LLGDPGTAKSQLLKFVEKVAPIAVYTSGKGSSAAGLT----ASVMKDPQTRNF----------VM 426
            |:|.|||.|:.|...:..:.| .:.......|||.|:    .||.|..:.|.|          .|
E. coli   215 LIGPPGTGKTMLASRINGLLP-DLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAM 278

  Fly   427 EGGAMV-------LADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAA 484
            .||..:       ||..||:.:||..:.......|:.|.:|...|.:::.....|..:|..::||
E. coli   279 VGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343

  Fly   485 AN-SIFGRWDDTKG----EENIDFMPTI----LSRFDMIFIVKDIHDESRDITLAKHIINVHLSS 540
            .| |..|.:.....    |:.:.::..:    |.|||:          |.:|.|..    ..:.|
E. coli   344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDL----------SLEIPLPP----PGILS 394

  Fly   541 NKSAPSEPAEGEISLSTFKKYIHYCRTH------------CGPRLSEAAGEKLKSRYVLMRSGAG 593
            ....|.|      |.:|.|:.:...|..            ..|.:.:..  ||:|...:...|. 
E. coli   395 KTVVPGE------SSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFC--KLESEDAMWLEGT- 450

  Fly   594 QQEKASDKRLSIPITVRQLEAVIRISESLAKIRLQPFATDEHVNEAL 640
                    .:.:.:::|..:.:::::.::|.|......|.:|:.||:
E. coli   451 --------LIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAV 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm5NP_524308.2 MCM_N 31..125 CDD:464206
MCM 128..648 CDD:214631 109/567 (19%)
yifBNP_418214.2 PRK09862 1..506 CDD:182120 109/567 (19%)
Blue background indicates that the domain is not in the aligned region.

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