DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mcm5 and mcm6

DIOPT Version :9

Sequence 1:NP_524308.2 Gene:Mcm5 / 41296 FlyBaseID:FBgn0017577 Length:733 Species:Drosophila melanogaster
Sequence 2:NP_001016221.1 Gene:mcm6 / 548975 XenbaseID:XB-GENE-5870537 Length:821 Species:Xenopus tropicalis


Alignment Length:816 Identity:252/816 - (30%)
Similarity:390/816 - (47%) Gaps:139/816 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DDAGVFFSDNFGGDNQQDAQINLQAVKKKYKEFIRTFNEE-------NFFYKYRDTLKRNYLNGR 62
            |.||..|.|......|           |.:.||:    ||       |.:....:.|.|...|  
 Frog    13 DTAGQLFKDELSDKCQ-----------KLFLEFL----EECKGKDGSNLYVSAAEELVRPERN-- 60

  Fly    63 YFLEIEMEDLVGFDETLADKLNKQPTEHLEIFEEAAREVAD------EITAPRPEHEEHMHDIQI 121
             .|.:...|:..:::.||..:.:   |:..::....|.|..      .|.|.:        :..:
 Frog    61 -TLVVNFTDIEYYNQQLATTIQE---EYYRVYPHLCRAVRSFARQMGNIPANK--------EFYV 113

  Fly   122 LLSSNANPTNIRQLKSDCVSKLVKIAGIIVAASGISAKATRMSIQCLSCSTVIPNLKVNPGLEGY 186
            ..|.......||:|.|..:..|::|:|.:|....:..:....:..|:.|.:|:.:::..   ..|
 Frog   114 AFSDFPARQKIRELSSAKIGTLLRISGQVVRTHPVHPELVSGTFLCMDCQSVVKDVEQQ---FRY 175

  Fly   187 ALPRKC-NTEQAGRPKCPLDPFFIMPDKCKCVDFQTLKLQELPDFVPQGEIPRHLQLF------- 243
            ..|..| |...|.|.:..||     .:|.:.||||.:::||....:|:|.|||.:::.       
 Frog   176 TQPTICKNPVCANRRRFTLD-----TNKSRFVDFQKVRIQETQAELPRGAIPRSVEIILRAEAVE 235

  Fly   244 -------CDRSLCERVVPGNRVLIQGIYSIRKVGKPSRRDG-REKAVVGVRAPYMR--------- 291
                   ||.:....|||....|..|...:....|.:..:| ..:.|.|::|..:|         
 Frog   236 TAMAGDRCDFTGTLIVVPDISALAAGDARMETGAKVTGGEGFNSEGVQGLKALGVRDLSYRLAFL 300

  Fly   292 --VVGIT--------VDSEGAGAISRYSNITSDEEEHFRRMAASGDIYERLSQSLAPSIFGSRDI 346
              .||.|        :..|...|.|..:.:|..|.|....|:...::|..|..||.|:|.|:.:|
 Frog   301 ACHVGATNPRFGGKDLREEDQTAESIKNQMTVQEWEKVFEMSQDKNLYHNLCTSLFPTIHGNDEI 365

  Fly   347 KKAITCMLFGGSRKRLPDGLCRRGDINVLLLGDPGTAKSQLLKFVEKVAPIAVYTSGKGSSAAGL 411
            |:.:..|||||..|...:|...||||||.::|||.|:|||.||.||:.:|.|||||||.||||||
 Frog   366 KRGVLLMLFGGVPKTTMEGTSLRGDINVCIVGDPSTSKSQFLKHVEEFSPRAVYTSGKASSAAGL 430

  Fly   412 TASVMKDPQTRNFVMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLN 476
            ||:|:||.::..||:|.||::|||.||.||||||||...|:||||||||||||||.|||:..|||
 Frog   431 TAAVVKDEESHEFVIEAGALMLADNGVCCIDEFDKMDLKDQVAIHEAMEQQTISITKAGVKATLN 495

  Fly   477 SRCSVLAAANSIFGRWDDTKG-EENIDFMPTILSRFDMIFIVKDIHDESRDITLAKHIINVHLSS 540
            :|.|:|||||.:.||::.:|. :.|::....|:||||:.||:.|..:|..|..:|:.|:::|..:
 Frog   496 ARTSILAAANPVGGRYERSKSLKHNVNLSAPIMSRFDLFFILVDECNEVTDYAIARRIVDLHARN 560

  Fly   541 NKSAPSEPAEGEISLSTFKKYIHYCRTHCGPRLSEAAGEKLKSRYVLMRSGAGQQEKASDKRLSI 605
            .:|     .|...|:...::|:.:.| ...|::::.|.|.:..:|..:|    |::.:...:.|.
 Frog   561 EES-----IERVYSIEDIQRYLLFAR-QFQPKITKEAEEFIVEQYRRLR----QRDGSGVAKSSW 615

  Fly   606 PITVRQLEAVIRISESLAKIRLQPFATDEHVNEALRL-----FQVSTLDAAM------------- 652
            .|||||||::||:|||:|::........:||.||.||     .:|.|.|.:.             
 Frog   616 RITVRQLESLIRLSESMARMHCSDEVQPKHVKEAFRLLSKSIIRVDTPDVSFDQGEDEKNVEEEV 680

  Fly   653 -TGSL-AGAEGFTTEEDQETLN---RIEKQLKRRFAIGSQVSEQNILQDFLRQKYEE------RT 706
             ..:| .|.|...|.:| |.:|   .....||..||...|:|...:|.   .||.||      .|
 Frog   681 NNANLNNGEEAMETNQD-EPINDKPSTNAGLKMSFAEYKQISNLLVLH---MQKMEEVEEECHLT 741

  Fly   707 VMKVIHTMIRRGE----------LQHRMQRKMLYRI 732
            ...:::..::..|          |:.|:..|:::|:
 Frog   742 TTDLVNWYLKEMEAEIETETELILKKRLIEKVIHRL 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mcm5NP_524308.2 MCM_N 31..124 CDD:405270 18/105 (17%)
MCM 128..648 CDD:214631 201/560 (36%)
mcm6NP_001016221.1 MCM_N 31..117 CDD:379644 17/103 (17%)
MCM 123..658 CDD:214631 200/552 (36%)
Arginine finger 529..532 2/2 (100%)
MCM6_C 710..819 CDD:375690 17/71 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D232729at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.