DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and NSR1

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_011675.1 Gene:NSR1 / 853064 SGDID:S000003391 Length:414 Species:Saccharomyces cerevisiae


Alignment Length:140 Identity:42/140 - (30%)
Similarity:61/140 - (43%) Gaps:33/140 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWV-----ARNPPGFAFVEFEDRRDAEDATRALDGTRC 72
            :::|||..:|.:..|...|||:|.:.:|.:     ...|.||.:|:|.:..||:.|..||.|...
Yeast   269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYI 333

  Fly    73 CGTRIRVEMSS------------------GRSRDRRRGEGGSSG-RSGSGRYRITPSARTTSTA- 117
            ....:|::.||                  |..|...||.||..| |.|.|.:|  ||....:|| 
Yeast   334 DNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRGGNRGFGGRGGARGGRGGFR--PSGSGANTAP 396

  Fly   118 ------TSSF 121
                  |:||
Yeast   397 LGRSRNTASF 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 22/72 (31%)
NSR1NP_011675.1 RRM1_gar2 169..244 CDD:409881
RRM2_gar2 269..341 CDD:409882 22/71 (31%)
Blue background indicates that the domain is not in the aligned region.

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