DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and NPL3

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_010720.3 Gene:NPL3 / 852042 SGDID:S000002840 Length:414 Species:Saccharomyces cerevisiae


Alignment Length:140 Identity:33/140 - (23%)
Similarity:53/140 - (37%) Gaps:35/140 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPRYREWDLA-CKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDAT 64
            |...:|.:|: .:::|........:.|:...|..:||::.|.:..   ||||||||:...|..|.
Yeast   114 MHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN---GFAFVEFEEAESAAKAI 175

  Fly    65 RALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRSGSGRYRITPS--------------ARTTS 115
            ..:.|.......:.|..|                :..:.|||||..              ||..|
Yeast   176 EEVHGKSFANQPLEVVYS----------------KLPAKRYRITMKNLPEGCSWQDLKDLARENS 224

  Fly   116 TATSSFYNIN 125
            ..| :|.::|
Yeast   225 LET-TFSSVN 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 18/68 (26%)
NPL3NP_010720.3 PHA03247 <11..87 CDD:223021
RBD_RRM1_NPL3 126..192 CDD:409777 18/68 (26%)
RRM2_SRSF1_4_like 200..271 CDD:409776 10/35 (29%)
Blue background indicates that the domain is not in the aligned region.

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