DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and SR34b

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_001328194.1 Gene:SR34b / 828027 AraportID:AT4G02430 Length:292 Species:Arabidopsis thaliana


Alignment Length:111 Identity:49/111 - (44%)
Similarity:62/111 - (55%) Gaps:11/111 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGT 75
            :|||||.....:.|:|..|:||||:..:  .:...|||:|||||||.|||:||....||....|.
plant     9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGH 73

  Fly    76 RIRVEMSSG---RSRDRR-----RGEGGSSGRSGSGRYRITPSART 113
            .:|||::.|   .|.|.|     ||.||..|..|.||.| .||.|:
plant    74 HLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRER-GPSRRS 118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 32/69 (46%)
SR34bNP_001328194.1 RRM1_SF2_plant_like 8..79 CDD:410011 32/69 (46%)
RRM2_SF2_plant_like 120..192 CDD:410014
Blue background indicates that the domain is not in the aligned region.

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