DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and RSZ22a

DIOPT Version :9

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_180035.1 Gene:RSZ22a / 816995 AraportID:AT2G24590 Length:196 Species:Arabidopsis thaliana


Alignment Length:93 Identity:44/93 - (47%)
Similarity:55/93 - (59%) Gaps:4/93 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTR 76
            :||||||....::.|:|..|..:|.:|:|||||.|||:||::|||.|||.||.|.:||.    ..
plant     3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK----NG 63

  Fly    77 IRVEMSSGRSRDRRRGEGGSSGRSGSGR 104
            .|||.|..|.....||.|...|..|.||
plant    64 WRVEQSHNRGGGGGRGGGRGGGDGGRGR 91

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 34/68 (50%)
RSZ22aNP_180035.1 RRM_SRSF3_like 3..71 CDD:240819 36/71 (51%)
zf-CCHC 97..111 CDD:278525
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 76 1.000 Domainoid score I3142
eggNOG 1 0.900 - - E1_KOG0107
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1533297at2759
OrthoFinder 1 1.000 - - FOG0000474
OrthoInspector 1 1.000 - - mtm954
orthoMCL 1 0.900 - - OOG6_101439
Panther 1 1.100 - - O PTHR23147
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X550
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.780

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