DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and AT2G21440

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_565513.1 Gene:AT2G21440 / 816683 AraportID:AT2G21440 Length:1003 Species:Arabidopsis thaliana


Alignment Length:105 Identity:32/105 - (30%)
Similarity:49/105 - (46%) Gaps:14/105 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 ACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNP-----PGFAFVEFEDRRDAEDATRALDG 69
            |..|.|..|..|.:..::|.||::.||:|..::..|.     .|||||:|..:.|...|....:|
plant    19 AATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83

  Fly    70 TRCCGTRIRVEMSSGR----SRDRRRGEG-----GSSGRS 100
            :...|.||.|:.::.|    .|..:..||     .|.|:|
plant    84 STVGGRRITVKQAAHRPSLQERRTKAAEGISVPDNSQGQS 123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 24/73 (33%)
AT2G21440NP_565513.1 RRM1_RBM28_like 21..99 CDD:409847 24/77 (31%)
ELAV_HUD_SF 24..411 CDD:273741 30/100 (30%)
RRM2_RBM28_like 332..408 CDD:409848
RRM3_RBM28_like 561..642 CDD:409849
RRM4_RBM28_like 713..810 CDD:409850
PTZ00121 <813..>968 CDD:173412
Blue background indicates that the domain is not in the aligned region.

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