DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp1 and TRA2B

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_004584.1 Gene:TRA2B / 6434 HGNCID:10781 Length:288 Species:Homo sapiens


Alignment Length:152 Identity:41/152 - (26%)
Similarity:59/152 - (38%) Gaps:49/152 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWV-----ARNPPGFAFVEFEDRRDAEDATRAL 67
            |..|.:.|..|....::.::...|:||||:.:|.:     :|...|||||.||:..||::|....
Human   115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

  Fly    68 DGTRCCGTRIRVEMS--------------------SGRSRD--------------------RRRG 92
            :|....|.||||:.|                    |.|.||                    |..|
Human   180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSYRGGG 244

  Fly    93 EGGSSGRSGSGRYRI----TPS 110
            .||...|:...|.:|    :||
Human   245 GGGGGWRAAQDRDQIYRRRSPS 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 25/73 (34%)
TRA2BNP_004584.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..114
RRM_TRA2 117..196 CDD:409798 27/78 (35%)
Linker 193..230 5/36 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 196..225 4/28 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 242..288 8/25 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.