DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and srsf5b

DIOPT Version :9

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_001002610.1 Gene:srsf5b / 436883 ZFINID:ZDB-GENE-040718-354 Length:285 Species:Danio rerio


Alignment Length:136 Identity:46/136 - (33%)
Similarity:65/136 - (47%) Gaps:27/136 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 CKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGT 75
            |::::|.|..||.:.::|..|..||.:|::.:.|   ||.||||:|.||||||...|||...|..
Zfish     4 CRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKR---GFGFVEFDDPRDAEDAVYELDGKELCNE 65

  Fly    76 RIRVEMSSGRSRDRRRGEGGSSGRSGSGRY------------RITPSARTTSTATSSFYNINNLQ 128
            |:.:|.:..|.|       |..||.|.||:            |..|..||.:...     :.||.
Zfish    66 RVTIEHARVRLR-------GGRGRGGGGRFPARYGRGSQDSRRNPPPMRTENRLI-----VENLS 118

  Fly   129 QQPSSQ 134
            .:.|.|
Zfish   119 SRVSWQ 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 28/68 (41%)
srsf5bNP_001002610.1 RRM1_SRSF4_like 5..73 CDD:240783 29/70 (41%)
RRM2_SRSF4_like 110..180 CDD:241044 4/20 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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