DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp1 and rump

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster


Alignment Length:173 Identity:38/173 - (21%)
Similarity:61/173 - (35%) Gaps:51/173 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVA----RNPPGFAFVEFEDRRDAEDATRALDGTRC 72
            ||:|.||.......:::..|...|.:::|.::    .|..|||.:|::...:|..|...||....
  Fly   233 KVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQML 297

  Fly    73 CGTRIRVEMSSGRSRDRRRG-----------------------------EGGSS-------GRSG 101
            ...|:.|.:.  |..|:..|                             .||.|       .:.|
  Fly   298 FDRRMTVRLD--RIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQSQGQLLGNAQQG 360

  Fly   102 S--GRYRITPSARTTSTATSSFYNINNLQ-----QQPSSQPQP 137
            |  |.....|::...|.||::.  :|||.     ...:.||.|
  Fly   361 SQLGSVGSQPNSSAVSNATTNL--LNNLTGVMFGNHAAVQPSP 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 19/72 (26%)
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 38/173 (22%)
RRM1_hnRNPM_like 58..133 CDD:409819
RRM2_hnRNPM_like 234..307 CDD:409820 18/72 (25%)
RRM_SF 565..629 CDD:473069
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.