DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and srsf6a

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:XP_005161979.1 Gene:srsf6a / 406775 ZFINID:ZDB-GENE-040426-2824 Length:400 Species:Danio rerio


Alignment Length:108 Identity:43/108 - (39%)
Similarity:54/108 - (50%) Gaps:15/108 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATR 65
            |||         ||:|.|.....:.:|:..|:.||.|..|.:..   |:.||||||.|||:||..
Zfish     1 MPR---------VYIGRLSYHVREKDIQRFFSGYGKLLEVDLKN---GYGFVEFEDTRDADDAVY 53

  Fly    66 ALDGTRCCGTRIRVEMSSGRSRDRRR---GEGGSSGRSGSGRY 105
            .|:|...||.|:.||.:.|..|||..   |.||..|..|.|.|
Zfish    54 ELNGKELCGERVMVEHARGPRRDRDSYGGGGGGGGGGGGGGGY 96

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 28/68 (41%)
srsf6aXP_005161979.1 RRM_SF 1..72 CDD:473069 32/82 (39%)
RRM2_SRSF6 135..207 CDD:410159
Blue background indicates that the domain is not in the aligned region.

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