DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and rbm4.3

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_998482.1 Gene:rbm4.3 / 406277 ZFINID:ZDB-GENE-040426-1938 Length:341 Species:Danio rerio


Alignment Length:76 Identity:26/76 - (34%)
Similarity:43/76 - (56%) Gaps:3/76 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTR 76
            |:::|||...|...|::..|::||.:....:.:|   ||||..:||:.|..|.:.|...:..||.
Zfish     3 KIFIGNLPQQAEVDELKSLFSQYGTVTECAIIKN---FAFVHMDDRKSATKAIKNLHLYKLHGTP 64

  Fly    77 IRVEMSSGRSR 87
            |.||.|.|:::
Zfish    65 INVEASRGKNQ 75

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 23/68 (34%)
rbm4.3NP_998482.1 RRM_SF 2..68 CDD:473069 22/67 (33%)
RRM1_2_CoAA_like 79..143 CDD:409779
Blue background indicates that the domain is not in the aligned region.

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