DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and srsf1b

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_956887.2 Gene:srsf1b / 393565 ZFINID:ZDB-GENE-040426-1467 Length:245 Species:Danio rerio


Alignment Length:106 Identity:49/106 - (46%)
Similarity:60/106 - (56%) Gaps:5/106 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 CKVYVGNLGSSASKHEIEGAFAKYGPLRNVWV--ARNPPGFAFVEFEDRRDAEDATRALDGTRCC 73
            |::|||||.......::|..|.|||.:|::.:  .|..|.||||||||.||||||....||....
Zfish    15 CRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 79

  Fly    74 GTRIRVEM-SSGRSRDRRRGEGGSSGRSGSGRYRITPSART 113
            |.|:|||. .|||...|..|.||..| :..|||. .||.|:
Zfish    80 GYRLRVEFPRSGRGGGRGGGGGGGVG-APRGRYG-PPSRRS 118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 33/70 (47%)
srsf1bNP_956887.2 RRM1_SRSF1 11..89 CDD:410010 35/73 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..116 12/28 (43%)
RRM2_SRSF1 112..195 CDD:410160 3/8 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 192..245
Blue background indicates that the domain is not in the aligned region.

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