DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp1 and Srsf4

DIOPT Version :9

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_001102155.1 Gene:Srsf4 / 362612 RGDID:1561347 Length:488 Species:Rattus norvegicus


Alignment Length:118 Identity:46/118 - (38%)
Similarity:59/118 - (50%) Gaps:21/118 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATR 65
            |||         ||:|.|...|.:.::|..|..||.:..|.:..   |:.||||:|.|||:||..
  Rat     1 MPR---------VYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVY 53

  Fly    66 ALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRSG-----SGRYRITPSART 113
            .|:|...||.|:.||.:.|..||...|    |||||     |||.:..|..||
  Rat    54 ELNGKDLCGERVIVEHARGPRRDGSYG----SGRSGYGYRRSGRDKYGPPTRT 102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 27/68 (40%)
Srsf4NP_001102155.1 RRM1_SRSF4_like 3..72 CDD:240783 29/80 (36%)
RRM2_SRSF4_like 104..175 CDD:241044
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.