DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and Srsf4

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_001102155.1 Gene:Srsf4 / 362612 RGDID:1561347 Length:488 Species:Rattus norvegicus


Alignment Length:118 Identity:46/118 - (38%)
Similarity:59/118 - (50%) Gaps:21/118 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPRYREWDLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATR 65
            |||         ||:|.|...|.:.::|..|..||.:..|.:..   |:.||||:|.|||:||..
  Rat     1 MPR---------VYIGRLSYQARERDVERFFKGYGKILEVDLKN---GYGFVEFDDLRDADDAVY 53

  Fly    66 ALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRSG-----SGRYRITPSART 113
            .|:|...||.|:.||.:.|..||...|    |||||     |||.:..|..||
  Rat    54 ELNGKDLCGERVIVEHARGPRRDGSYG----SGRSGYGYRRSGRDKYGPPTRT 102

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 27/68 (40%)
Srsf4NP_001102155.1 RRM1_SRSF4_like 3..72 CDD:409774 29/80 (36%)
RRM2_SRSF4_like 104..175 CDD:410012
Blue background indicates that the domain is not in the aligned region.

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