DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rbp1 and nito

DIOPT Version :9

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_001286174.1 Gene:nito / 35756 FlyBaseID:FBgn0027548 Length:793 Species:Drosophila melanogaster


Alignment Length:124 Identity:29/124 - (23%)
Similarity:56/124 - (45%) Gaps:31/124 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPG----FAFVEFEDRRDAEDATRALDGTRCC 73
            ::.|||..:.:..|:...|.|||.:.::.:.|.|||    ||||.:::          ||    .
  Fly   316 LFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQN----------LD----M 366

  Fly    74 GTRIRVEMSSGRSRDRRRGE--GGSSGRSGSGRYRITPSARTTSTATSSFYNINNLQQQ 130
            ..|.::|:|         |:  |....:.|.|  ::||:.|.......::.::..|:::
  Fly   367 AHRAKIELS---------GQYIGKFQCKIGYG--KVTPATRMWIGGLGAWTSVTQLERE 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 19/71 (27%)
nitoNP_001286174.1 RRM <56..>223 CDD:223796
RRM1_Spen 98..175 CDD:240754
RRM2_Spen 312..390 CDD:240755 25/98 (26%)
RRM3_Spen 397..467 CDD:240756 1/18 (6%)
SPOC 630..789 CDD:311609
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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