DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp1 and srsf2b

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_955945.2 Gene:srsf2b / 323700 ZFINID:ZDB-GENE-030131-2420 Length:220 Species:Danio rerio


Alignment Length:121 Identity:47/121 - (38%)
Similarity:61/121 - (50%) Gaps:17/121 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VGNLGSSASKHEIEGAFAKYGPLRNVWVARN-----PPGFAFVEFEDRRDAEDATRALDGTRCCG 74
            |.||....|...:...|.|||.:.:|::.|:     ..|||||.|.|:||||||..|:||....|
Zfish    18 VDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAILDG 82

  Fly    75 TRIRVEMSS-GRSRDR--------RRGEGGSSG--RSGSGRYRITPSARTTSTATS 119
            ..:||:|:. ||..|.        |||.||..|  |.|:.|.| :|..|..|.:.|
Zfish    83 RELRVQMARYGRPPDSYYGGGGGGRRGSGGGGGSRRHGARRSR-SPRRRRRSRSRS 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 29/70 (41%)
srsf2bNP_955945.2 RRM_SRSF2_SRSF8 16..88 CDD:409751 28/69 (41%)

Return to query results.
Submit another query.