DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbp1 and Rbm4

DIOPT Version :10

Sequence 1:NP_731510.1 Gene:Rbp1 / 41294 FlyBaseID:FBgn0260944 Length:144 Species:Drosophila melanogaster
Sequence 2:NP_033058.2 Gene:Rbm4 / 19653 MGIID:1100865 Length:361 Species:Mus musculus


Alignment Length:138 Identity:41/138 - (29%)
Similarity:60/138 - (43%) Gaps:30/138 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTR 76
            |::|||:..:.:..|:...|.:|||:....:.::   :|||..|...||.:|.|.||.|...|.|
Mouse    79 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD---YAFVHMERAEDAVEAIRGLDNTEFQGKR 140

  Fly    77 IRVEMSSGRSRDRRRGEGGSSG--RSG-------------SGR-----------YRITPSARTTS 115
            :.|::|:.|.| ...|.|..||  |.|             |||           |....:..|.|
Mouse   141 MHVQLSTSRLR-TAPGMGDQSGCYRCGKEGHWSKECPIDRSGRVADLTEQYNEQYGAVRTPYTMS 204

  Fly   116 TATSSFYN 123
            ...|.:||
Mouse   205 YGDSLYYN 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbp1NP_731510.1 RRM_SRSF3_like 12..81 CDD:409808 23/68 (34%)
Rbm4NP_033058.2 RRM1_RBM4 2..68 CDD:410018
RRM2_RBM4 78..144 CDD:410019 22/67 (33%)
PTZ00368 <145..>181 CDD:173561 9/36 (25%)
ZnF_C2HC 161..176 CDD:197667 3/14 (21%)
Interaction with TNPO3. /evidence=ECO:0000250 196..361 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.