DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIFbeta and gtf2f2a

DIOPT Version :9

Sequence 1:NP_524305.2 Gene:TfIIFbeta / 41290 FlyBaseID:FBgn0010421 Length:277 Species:Drosophila melanogaster
Sequence 2:NP_001002127.2 Gene:gtf2f2a / 415217 ZFINID:ZDB-GENE-040625-131 Length:265 Species:Danio rerio


Alignment Length:263 Identity:129/263 - (49%)
Similarity:176/263 - (66%) Gaps:14/263 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 DLDLSNA--GRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLALDP-- 75
            ::||:.|  ..||||||||||::|:|.||....:||||||:|..| ||:||.:|...:..::.  
Zfish     6 EVDLTGAKQNAGVWLVKVPKYLSQQWTKATGRGEVGKLRISKNQG-KAEVSFTLNEELTTIETIG 69

  Fly    76 EE----KIPTEHILDVSQVTKQTLGVFSH--MAPSDGKENSTTSAAQPDNEKLYMEGRIVQKLEC 134
            |:    :.|.||...:..|..|||.||:.  ...||.:.:.:.:.:.||  |:.:||.:||:.||
Zfish    70 EKTSMVRAPREHPFTLQTVGGQTLAVFTENSSGQSDAEASGSGTGSGPD--KIALEGVVVQRAEC 132

  Fly   135 RPIADNCYMKLKLESIRKASEPQRRVQPIDK-IVQNFKPVKDHAHNIEYRERKKAEGKKARDDKN 198
            ||.....||:||...|.:.|:|.|..|.:|| :..|:|||.:||:|::|.:|||.|||:||.||.
Zfish   133 RPAVSESYMRLKKLQIEELSKPLRFSQQLDKAVTTNYKPVANHAYNLDYEKRKKEEGKRARADKQ 197

  Fly   199 AVMDMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELKKEYRHYKTEE 263
            .|:||||.||||||:|||||||.||.||:.||||||:|:..||:|..|||.||||.|||||::||
Zfish   198 QVLDMLFSAFEKHQFYNIKDLVDITKQPVIYLKEILRDIGIYNVKGTHKNTWELKPEYRHYQSEE 262

  Fly   264 KKE 266
            |.:
Zfish   263 KSD 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIIFbetaNP_524305.2 TFIIF_beta 20..253 CDD:280438 117/243 (48%)
gtf2f2aNP_001002127.2 TFIIF_beta 13..252 CDD:280438 116/241 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593533
Domainoid 1 1.000 100 1.000 Domainoid score I6956
eggNOG 1 0.900 - - E1_COG5090
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H37884
Inparanoid 1 1.050 241 1.000 Inparanoid score I3311
OMA 1 1.010 - - QHG55375
OrthoDB 1 1.010 - - D1496393at2759
OrthoFinder 1 1.000 - - FOG0002863
OrthoInspector 1 1.000 - - otm24843
orthoMCL 1 0.900 - - OOG6_102568
Panther 1 1.100 - - LDO PTHR10445
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1466
SonicParanoid 1 1.000 - - X3816
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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