DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cap-H2 and ncaph2

DIOPT Version :9

Sequence 1:NP_650014.2 Gene:Cap-H2 / 41289 FlyBaseID:FBgn0037831 Length:960 Species:Drosophila melanogaster
Sequence 2:NP_001037964.1 Gene:ncaph2 / 733729 XenbaseID:XB-GENE-993063 Length:624 Species:Xenopus tropicalis


Alignment Length:868 Identity:174/868 - (20%)
Similarity:278/868 - (32%) Gaps:299/868 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 DEQQDLASLVVLLEELSKNTDYSTDLRISLGYYIEELLRHCL----GRNDVS-RRSAIVAAGSAL 100
            |.:.....|:..:.:|:||  :..|:...||.|:|||.:.|:    |:..:: ..:|::..||| 
 Frog     3 DAESRFTHLLQPIRDLTKN--WEVDVAAQLGEYLEELDQICISFDGGKTTMNFAEAALLIQGSA- 64

  Fly   101 QYCGKIYGDRVEYLCQVVEHQIEALLTSELQKETPSGSAAPEKNERRPEETRKRHPKKLTNKEVD 165
              |  ||..:||||..:|...::.:                 .|::|.::     |..:....||
 Frog    65 --C--IYSKKVEYLYSLVYQALDFI-----------------SNKKRDQQ-----PASVGADGVD 103

  Fly   166 PYLLTLEPKRFKTMSDDKRFNAAGFVKCTRNRTIEYLYQDHTPPNLWKHAPIVDPHNPYDQDEKK 230
                           .|..|       ..||...|:|..|          .|:||... :.|.||
 Frog   104 ---------------KDATF-------AHRNDEEEFLSLD----------DIIDPKKT-NVDIKK 135

  Fly   231 QYKMFTYHVEHRYNTLLPDIPFERLNLIKEYVHTNQVNTTEILNEHMTTKEYLDEYIALENQMLA 295
            ...:...::          :|...:.|:.                        .|....:|..|.
 Frog   136 DQVLHVVNI----------VPLTPMALVP------------------------PEETEKKNNPLC 166

  Fly   296 ARYGAIVTRRRRL-------VDSARFMEDNLDEGLAKKMCMDKNLPMDTNETVLIDQSLVDENSR 353
            :|.|.::..|:..       ..|..||.:     ||.|.      ||.      ..|.:......
 Frog   167 SRKGEVLASRKDFRMNTCTPHPSGAFMLE-----LAGKS------PMQ------FLQHIQHHEEA 214

  Fly   354 SLTTAESTMGISQAENSTLKSSEVEATLSVSHIENSLSDSQEENPPLSSTLAINESSVLDSTRVD 418
            ||...|.. .|.:.||..:::.:.:....|..::.|     :|..|.:.             ..|
 Frog   215 SLAQGEQN-AIPEGENDNMEAEKSDCADPVQVLQFS-----DEGAPAAE-------------NGD 260

  Fly   419 PIKDLTLDELLLIDSGISMEELSDIQ---MHTAGQSFDDEGVVLSDLEDQRQLSPMLQMVSPSME 480
            ....|.||:......| .:|:...|:   |.|     ::.|.||.:..:|:..|.          
 Frog   261 GAGFLPLDDHDEAGDG-EVEQAEHIERRKMQT-----EERGYVLRERLEQKPASA---------- 309

  Fly   481 AKTLNIIEMDADLIMNVPREVSYPILLNVMGL-PIKRLRRKCIFKLPPEFDLFRQARLPIKREGQ 544
                            :..|.|.|    ..|| |.:....|                 |.|:   
 Frog   310 ----------------IKNETSDP----WCGLDPFESCEEK-----------------PFKK--- 334

  Fly   545 QKSPTTPRTVLQIGREAPQNEREPGSPCSLEFDEDLNFLGF--------------RQRRPTFDSG 595
            .|..|.||   .|..:...|:|:...||.|:     :|:.:              |::.|||   
 Frog   335 GKHYTLPR---GIAEDLSSNKRKRKLPCKLQ-----DFMKWFSSTHWDGSEAMKSRRKGPTF--- 388

  Fly   596 FDIEEPRVSSCVSTIGEVKTELEDEIEANTNNLTDASASDALNENVNDTKESGLGDSLAQELNAS 660
            .|:|       |.....:|..:              :|...|:..:.           ||.:...
 Frog   389 ADME-------VLYWKHIKERM--------------TAQRQLHRRMG-----------AQFVKEV 421

  Fly   661 TEPNAENNTAN--SSQLEVTATESSGTLSGLETTVDLGMESALVSSVLDLSTEPSAMDSNIINVT 723
            |..|.|....|  ....:....:..|.........|||            ...|:.:..      
 Frog   422 TLLNQEEELVNPLEEPRDADYLDYDGPADDASDHEDLG------------ENIPACLRE------ 468

  Fly   724 QPDNSDLEISTVQDQDTLHDEADAN-DLSAETPNPIADSAVDDCSL-IRDWHRRLAPALEAAHER 786
            :|...|:|..|:.||.:..:....| :|........|...|  .|| :|:|..::.|.|:...||
 Frog   469 EPALGDIEPVTLHDQLSYEELVRRNVELFMANSQKYAQETV--LSLRVREWEDKMGPQLQEQEER 531

  Fly   787 QNFNIKDLGTEI-LDICKAGNRTATLADVMADKDPSIMCRYMLASLVLTNHGNVSLDFENRDKSK 850
            ..|:|.|.|..: ....|.| ...:.|.:||||:|..:||||||||.|.|      |:......|
 Frog   532 GAFDIHDYGDRLTAQFSKVG-EWRSFASLMADKEPYEVCRYMLASLQLAN------DYTVEVSQK 589

  Fly   851 P-----IDMSQFRMHLKSMKRME 868
            |     :|....|: |...|..|
 Frog   590 PGLHEGLDTMALRL-LSQQKAHE 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cap-H2NP_650014.2 CNDH2_C <769..844 CDD:293463 29/75 (39%)
ncaph2NP_001037964.1 CNDH2_N 11..122 CDD:310701 37/171 (22%)
CNDH2_M 147..260 CDD:318961 26/172 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 215..239 6/24 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..287 8/48 (17%)
CNDH2_C 317..606 CDD:318951 85/383 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005551
OrthoInspector 1 1.000 - - otm47593
Panther 1 1.100 - - LDO PTHR14324
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2597
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.130

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