DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cap-H2 and NCAPH2

DIOPT Version :9

Sequence 1:NP_650014.2 Gene:Cap-H2 / 41289 FlyBaseID:FBgn0037831 Length:960 Species:Drosophila melanogaster
Sequence 2:NP_001171940.1 Gene:NCAPH2 / 29781 HGNCID:25071 Length:606 Species:Homo sapiens


Alignment Length:853 Identity:151/853 - (17%)
Similarity:265/853 - (31%) Gaps:284/853 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 DEQQDLASLVVLLEELSKNTDYSTDLRISLGYYIEELLRHCLGRNDVSRRSAIVAAGSALQYCGK 105
            |.:...|.|:..:.:|:||  :..|:...||.|:|||.:.|:..::.......:.|...:|....
Human     3 DVEARFAHLLQPIRDLTKN--WEVDVAAQLGEYLEELDQICISFDEGKTTMNFIEAALLIQGSAC 65

  Fly   106 IYGDRVEYLCQVVEHQIEALLTSELQKETPSGSAAPEKNERRPEETRKRHPKKLTNKEVDPYLLT 170
            :|..:||||..:|...::.:          ||               ||..|:|::.:.|     
Human    66 VYSKKVEYLYSLVYQALDFI----------SG---------------KRRAKQLSSVQED----- 100

  Fly   171 LEPKRFKTMSDDKRFNAAGFVKCTRNRTIEYLYQDHTPPNLWKHAPIVDPHNPYDQDEKKQYKMF 235
                         |.|........:....|:|..|                              
Human   101 -------------RANGVASSGVPQEAENEFLSLD------------------------------ 122

  Fly   236 TYHVEHRYNTLLPDIPFERLNL-IKEYVHTNQVNTTEILNEHMTTKEYLDEYIALENQMLAARYG 299
                         |.|..|.|: :|.....::|....:|...:...:.:::    .|..|.:|.|
Human   123 -------------DFPDSRTNVDLKNDQTPSEVLIIPLLPMALVAPDEMEK----NNNPLYSRQG 170

  Fly   300 AIVTRRR-----RLVDSAR--FMEDNLDEGLAKKMCMDKNLPMDTNETVLIDQSLVDENSRSLTT 357
            .::..|:     ..|...|  ||.:  .||::         ||:                   ..
Human   171 EVLASRKDFRMNTCVPHPRGAFMLE--PEGMS---------PME-------------------PA 205

  Fly   358 AESTMGISQAENSTLKSSEVEATLSVSHIENSLSDSQEENPPLSSTLAINESSVLDSTRVDPIKD 422
            ..|.|..:|.:....:...:|.::..|.:. :|..|||..|.....:.:...             
Human   206 GVSPMPGTQKDTGRTEEQPMEVSVCRSPVP-ALGFSQEPGPSPEGPMPLGGG------------- 256

  Fly   423 LTLDELLLIDSGISMEELSDIQMHTAGQSFDDEGVVLSDLEDQRQLSPMLQMVSPSMEAKTLNII 487
                                          :||     |.|:..:| |.......::|.|.....
Human   257 ------------------------------EDE-----DAEEAVEL-PEASAPKAALEPKESRSP 285

  Fly   488 EMDADLIMNVPREVSYPILLNVMGLPIKRLRRKCIFKLP---PEFDLFRQARLPIKREGQQKSPT 549
            :..|.|    ||..   :|....|.|..   ..|:.:.|   ...|.|........::|:     
Human   286 QQSAAL----PRRY---MLREREGAPEP---ASCVKETPDPWQSLDPFDSLESKPFKKGR----- 335

  Fly   550 TPRTVLQIGREAPQNEREPGSPCSLE---------FDEDLNFLGFRQRRPTFDSGFDIEEPRVSS 605
             |.:|.....||...:|:......|:         :.:..:....|::.|:|   .|:|      
Human   336 -PYSVPPCVEEALGQKRKRKGAAKLQDFHQWYLAAYADHADSRRLRRKGPSF---ADME------ 390

  Fly   606 CVSTIGEVKTELEDEIEANTNNLTDASASDALNENVNDTKESGLGDSLAQELNASTEPNAENNTA 670
             |.....||.:||        .|......:...:.:...:|..|.||| ::|.|:.:        
Human   391 -VLYWTHVKEQLE--------TLRKLQRREVAEQWLRPAEEDHLEDSL-EDLGAAAD-------- 437

  Fly   671 NSSQLEVTATESSGTLSGLETTVDLGMESALVSSVLDLSTEPSAMD-SNIINVTQPDNSDLEIST 734
                            ..||....:..|.|......||...|.::. ..::.    .|.:|.|:|
Human   438 ----------------DFLEPEEYMEPEGADPREAADLDAVPMSLSYEELVR----RNVELFIAT 482

  Fly   735 VQD--QDTLHDEADANDLSAETPNPIADSAVDDCSLIRDWHRRLAPALEAAHERQNFNIKDLGTE 797
            .|.  |:|        :||..               ||||...:.|.|:...:...|:|...|.:
Human   483 SQKFVQET--------ELSQR---------------IRDWEDTVQPLLQEQEQHVPFDIHTYGDQ 524

  Fly   798 ILDICKAGNRTATLADVMADKDPSIMCRYMLASLVLTNHGNVSLDFENRDKSKPIDMSQFRM--H 860
            ::......|.....|:::|.:....:||.|||||.|.|...|.:. :.......:|....|:  |
Human   525 LVSRFPQLNEWCPFAELVAGQPAFEVCRSMLASLQLANDYTVEIT-QQPGLEMAVDTMSLRLLTH 588

  Fly   861 LKSMKRME 868
            .::.||.:
Human   589 QRAHKRFQ 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cap-H2NP_650014.2 CNDH2_C <769..844 CDD:293463 22/74 (30%)
NCAPH2NP_001171940.1 CNDH2_N 11..123 CDD:283849 32/199 (16%)
CNDH2_M 147..252 CDD:293474 24/139 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 194..331 33/226 (15%)
CNDH2_C 316..588 CDD:293463 67/348 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2359
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005551
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14324
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2597
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
44.030

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