DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TkR86C and RGD1560455

DIOPT Version :9

Sequence 1:NP_001097741.1 Gene:TkR86C / 41286 FlyBaseID:FBgn0004841 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_001100409.1 Gene:RGD1560455 / 302377 RGDID:1560455 Length:352 Species:Rattus norvegicus


Alignment Length:316 Identity:76/316 - (24%)
Similarity:138/316 - (43%) Gaps:36/316 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 QKTIWAIIFGLMMFVAIAGNGIVLWIVTGHRSMRTVTNYFLLNLSIADLLMSSLNCVFNFIFMLN 146
            |.:::|..:..:....:..|...||::....|.:.....|::|||:|| |...|:......:.:|
  Rat    21 QNSLYATTYIFIFIPGLLANSAALWVLCRFISKKNKAIIFMINLSVAD-LAHVLSLPLRIYYYIN 84

  Fly   147 SDWPFGSIYCTINNFVANVTVSTSVFTLVAISFDRYIAIVHPLKRRTSRRKVRI-ILVLIWAL-- 208
            ..|||....|.:..::..:.:..|:|.|..||..|.:.::.|.:.|..:|:..: |...:|.:  
  Rat    85 HHWPFQRALCLLCFYLKYLNMYASIFFLTCISLQRCLFLLKPFRARNWKRRYDVGISAAVWIIVG 149

  Fly   209 SCVLSAPCLLYSSIMTKHYYNGKSRTVCFMMWPD-GRYPTSMADYAYNLIILVLTYGIPMIVMLI 272
            :..|..|.|..:.:..    |.:|   ||   .| |.:..|||. :..::......|..:.|::|
  Rat   150 TACLPLPILRSAGLAN----NSES---CF---ADLGLHDISMAS-SIGMVTAAELGGFVLPVVII 203

  Fly   273 CYSLMGRVLWGSRSIGENTDRQMESMKSKRKVVRMFIAIVSIFAICWLPYHLFFIYAYHNNQ--- 334
            .|     ..|.:|...:......:::|.::|.:||.:....:|.:|:.||||.|.:.....|   
  Rat   204 TY-----CTWKTRKSLQEFQDPPQNIKERKKALRMVLMCAVVFIVCFTPYHLNFPFFMMVKQRVF 263

  Fly   335 -----VASTKYVQHMYLGFYWLAMSNAMVNPLIYYWMNKRFRMYFQR----IICCC 381
                 :.||.|...:.|   .||..|..::|::||:|...||..|..    :|..|
  Rat   264 SNCSFIKSTLYFHIISL---CLANLNCCLDPVVYYFMTSEFRDQFSEHGNLVIQSC 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TkR86CNP_001097741.1 7tm_4 92..376 CDD:304433 72/295 (24%)
7tm_1 100..363 CDD:278431 66/274 (24%)
RGD1560455NP_001100409.1 7tm_GPCRs 23..304 CDD:421689 72/300 (24%)
TM helix 1 23..50 CDD:410628 4/26 (15%)
TM helix 2 57..82 CDD:410628 8/25 (32%)
TM helix 3 94..124 CDD:410628 7/29 (24%)
TM helix 4 135..157 CDD:410628 3/21 (14%)
TM helix 5 184..213 CDD:410628 6/33 (18%)
TM helix 6 225..255 CDD:410628 11/29 (38%)
TM helix 7 273..298 CDD:410628 8/27 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.