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Protein Alignment CG6465 and Cndp2

DIOPT Version :9

Sequence 1:	NP_650004.1	Gene:	CG6465 / 41274	FlyBaseID:	FBgn0037818	Length:	401	Species:	Drosophila melanogaster
Sequence 2:	NP_001010920.1	Gene:	Cndp2 / 291394	RGDID:	1305827	Length:	475	Species:	Rattus norvegicus

Alignment Length:	504	Identity:	94/504 - (18%)
Similarity:	169/504 - (33%)	Gaps:	157/504 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly     9 DEEIQYFREYLRIPSVHPDPD-----------YAPCVEFLRRQANLMDLPMKVYYPANEQNPV-- 60
            |..::...|::.|.||...|:           .|..|:.|.....|:|:. |...|...:.|:
  Rat    16 DRFVKKLAEWVAIQSVSAWPEKRGEIRRMTEAAAADVQRLGGSVELVDIG-KQKLPDGSEIPLPP 79

  Fly    61 VVLTWKGLNPELPSILLNSHMDVVP-VFPENWTHPPFGADIDEEGRIFARGTQDMKSVGMQHLAA 124
            ::|...|.:|:..::.:..|:||.| ...:.|...||.. ::.||:::.||:.|.|......:.|
  Rat    80 ILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTL-VEREGKLYGRGSTDDKGPVAGWMNA 143

  Fly   125 VRALKRSGAKFKRTIHISFVADEEMGGRYGM--------RPFVPTEDFRALNVGFAMDEGLASPD 181
            :.|.:::|.:....:.......||.|.. |:        ..|....|:..::..:.:  |...|
  Rat   144 LEAYQKTGQEIPVNLRFCLEGMEESGSE-GLDELIFAQKDKFFKDVDYVCISDNYWL--GKNKP- 204

  Fly   182 EQLPLFYAERAVWRVYFNI----------SGTAG--------------------HGSLLLP--NT 214
               .:.|..|.:  .||.|          ||..|                    .|.:|:|  |.
  Rat   205 ---CITYGLRGI--CYFFIEVECSDKDLHSGVYGGSVHEAMTDLISLMGCLIDKKGKILIPGIND 264

  Fly   215 A--------GEKLNYIVGKMMEFRRSQVQRLQNNPELVIGDVTTINLTK---------------- 255
            |        .|..::|...|.||.:.            :|..|.::..|
  Rat   265 AVAPVTDEEHELYDHIDFDMEEFAKD------------VGAGTLLHSCKKDILMHRWRYPSLSLH 317

  Fly   256 -----LGGGVQSNVVPPLLMVCFDCRLALD----VDFEEFEANLHKWCADV------------GG 299
                 ..|.....|:|..::..|..||..|    |..|:..:.|.|..|::            ||
  Rat   318 GIEGAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSYLSKKFAELQSPNKFKVYMGHGG 382

  Fly   300 GIEITYEQKQPKVPPTAIDGSNPFWLAFKKATDEMHISIKPQIF-TGGTDSRYIRAVGIP-ALGF 362
                         .|...|.::|.:.|.::|...: ..::|.:. .||:         || .|.|
  Rat   383 -------------KPWVSDFNHPHYQAGRRALKTV-FGVEPDLTREGGS---------IPVTLTF 424

  Fly   363 SPMNNTPVLL----------HDHDEFIQADIYLRGVQIFQKIISNIANV 401
            .......|:|          |..:|.:....|:.|.::....:..::.:
  Rat   425 QEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 473

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.