DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and KNAT6

DIOPT Version :9

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_173752.3 Gene:KNAT6 / 838946 AraportID:AT1G23380 Length:329 Species:Arabidopsis thaliana


Alignment Length:378 Identity:78/378 - (20%)
Similarity:121/378 - (32%) Gaps:124/378 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 VSPVGNHLMGAIPEVHKRD--------KDAIYEHPLFPLLALIFEKCELATCTPREPGVQGGDVC 131
            ||.:.:......||:.:.|        |..|..||.:|.|...:..|:     .::.|......|
plant    59 VSALSSEAASIAPEIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQ-----KKQVGAPPEIAC 118

  Fly   132 SSESFNEDIAMFSKQIRSQKPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCL 196
            ..|....:..::.::: .....:.||||:|..|.....:|..:..:|.:..:        ..:|.
plant   119 LLEEIQRESDVYKQEV-VPSSCFGADPELDEFMETYCDILVKYKSDLARPFD--------EATCF 174

  Fly   197 KGKMPIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVRPPSSSLSYGGAMNDDARS 261
            ..|:.:.|    |:.....|  ||.|                          :|..|.::.|...
plant   175 LNKIEMQL----RNLCTGVE--SARG--------------------------VSEDGVISSDEEL 207

  Fly   262 PGAGSTPGPLSQQPPALDTSDPDGKFLSSLNPSELTYDGRWCRREWSSPADARNADASRRLYSSV 326
            .|                            ...|:..|||         ....:.|...||..  
plant   208 SG----------------------------GDHEVAEDGR---------QRCEDRDLKDRLLR-- 233

  Fly   327 FLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGKKNQKKRGIFPKVATNILRAWLFQHLTHP 391
                  .||:..|......|                  .:||:|..|:.|...|..|...|...|
plant   234 ------KFGSRISTLKLEFS------------------KKKKKGKLPREARQALLDWWNLHYKWP 274

  Fly   392 YPSEDQKKQLAQDTGLTILQVNNWFINARRRIVQP-------MIDQSNRAVYT 437
            ||:|..|..||..|||...|:||||||.|:|..:|       |:|.|:.:.:|
plant   275 YPTEGDKIALADATGLDQKQINNWFINQRKRHWKPSENMPFAMMDDSSGSFFT 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:406806 14/83 (17%)
Homeobox_KN 383..422 CDD:399131 20/38 (53%)
KNAT6NP_173752.3 KNOX1 85..125 CDD:397730 10/44 (23%)
KNOX2 139..186 CDD:397731 12/58 (21%)
ELK 226..247 CDD:397729 6/28 (21%)
Homeobox_KN 266..305 CDD:399131 20/38 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11850
Phylome 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.000

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