DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hth and meis3

DIOPT Version :9

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_571853.1 Gene:meis3 / 81885 ZFINID:ZDB-GENE-010406-2 Length:415 Species:Danio rerio


Alignment Length:455 Identity:205/455 - (45%)
Similarity:254/455 - (55%) Gaps:121/455 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 SHVSPVGNH--LMGAIPEVH---------KRDKDAIYEHPLFPLLALIFEKCELATCTPRE---- 122
            |...|||.:  .|.::|..|         |..:|.||.|||||||||:|||||||||:||:    
Zfish    14 SDAMPVGGYRDTMRSLPPPHYGHTVPDSLKHHRDQIYGHPLFPLLALVFEKCELATCSPRDSTSM 78

  Fly   123 ------PGVQG-GDVCSSESFNEDIAMFSKQIRSQKPYYTADPEVDSLMVQAIQVLRFHLLELEK 180
                  ||:.. .|||||:|||:|||.|:|||||:||.::::||:|:||:|||||||||||||||
Zfish    79 SNPAHLPGMTNHSDVCSSDSFNDDIAAFAKQIRSEKPIFSSNPELDNLMIQAIQVLRFHLLELEK 143

  Fly   181 VHELCDNFCHRYISCLKGKMPIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVRPP 245
            ||:||||||||||:|||||||.|||:::|             ||.|.:|....|...::      
Zfish   144 VHDLCDNFCHRYITCLKGKMPTDLVLEDR-------------EGGSKSDMEDFTGSCTS------ 189

  Fly   246 SSSLSYGGAMNDDARSPGAGSTPGPLSQQPPALDTSDPDGKFLSSLNPSELTYDGRWCRREWSSP 310
                                     ||:|..:. ..|||.                 |   .|:|
Zfish   190 -------------------------LSEQNQSW-LRDPDD-----------------C---VSTP 208

  Fly   311 ADARNADASRRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGKKNQKKRGIFPKV 375
            :...:|        |..|.|......|.:||..:.|:.| ..|||||:....::|.|||||||||
Zfish   209 SGTPSA--------SCGLNSHSVENCSDAGDGLDGSVAS-PSTGEEDESDRDRRNNKKRGIFPKV 264

  Fly   376 ATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNR----AVY 436
            ||||:||||||||:||||||:|||||:||||||||||||||||||||||||||||:||    |.|
Zfish   265 ATNIMRAWLFQHLSHPYPSEEQKKQLSQDTGLTILQVNNWFINARRRIVQPMIDQTNRSGQSAPY 329

  Fly   437 TPHPGPSGYGHDAMGYMMDSQAHMMHRPPGDPGF-------------HQGYPHYPPA--EYYGQH 486
            :|.....|      ||.:|:|:|:..|..|..|.             ..||.|..|:  .|.|.|
Zfish   330 SPEGAALG------GYGLDAQSHLGLRTAGLQGLPSLPTDYPGALLPQPGYSHAGPSLHPYPGPH 388

  Fly   487  486
            Zfish   389  388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:406806 62/84 (74%)
Homeobox_KN 383..422 CDD:399131 35/38 (92%)
meis3NP_571853.1 Meis_PKNOX_N 91..173 CDD:293102 62/94 (66%)
Homeobox_KN 272..311 CDD:283551 35/38 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587117
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 392 1.000 Inparanoid score I1935
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126341at2759
OrthoFinder 1 1.000 - - FOG0000410
OrthoInspector 1 1.000 - - otm24280
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11850
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1010.000

Return to query results.
Submit another query.