Protein Alignment hth and caup

DIOPT Version :10

• Sequence 1: NP_476576.1
• Gene: hth / 41273
• FlyBaseID: FBgn0001235
• Length: 487
• Species: Drosophila melanogaster
• Sequence 2: NP_524046.2
• Gene: caup / 39440
• FlyBaseID: FBgn0015919
• Length: 693
• Species: Drosophila melanogaster
• Alignment Length: 336
• Identity: 84/336 - (25%)
• Similarity: 125/336 - (37%)
• Gaps: 115/336 - (34%)

  Fly   219 SANGEGRSNADSTSHTDGASTPDVRPPSSSLSYGGAMNDDARSPGAGST----------PGPLSQ 273
            :||....:|.||.|...|.|     |.|.:       |:.:.||..|||          ||.:||
  Fly    14 TANQLTTANTDSQSGHGGGS-----PLSGT-------NEASLSPSGGSTATGLTAGPLSPGAVSQ 66

  Fly   274 Q-----------PPALDT------------------------------SDP-DGKFLSS--LNPS 294
            .           .||.|.                              :|| .|:.:.|  .:|:
  Fly    67 SSHHAGHKGLSTSPAEDVVGGDVPVGLSSAAQDLPSRGSCCENGRPIITDPVSGQTVCSCQYDPA 131

  Fly   295 ELTYDGRWCRREWSS------------PADARNADASRRLYSSVFLGSPDN-FG---TSASGDAS 343
            .|...| :.|....|            |::.:|...|..:.:|.|.....| :|   ||.|.:.|
  Fly   132 RLAIGG-YSRMALPSGGVGVGVYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMS 195

  Fly   344 ---NASIGS------------GEGTGEEDDDASGKKNQKKRGIFPKVATNILRAWLFQHLTHPYP 393
               :||:.|            ..|.|...|.|:.:||..:.      :|..|:|||.:|..:|||
  Fly   196 AWTSASLQSTTGYYSYDPTLAAYGYGPNYDLAARRKNATRE------STATLKAWLSEHKKNPYP 254

  Fly   394 SEDQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVYTPHPGPSGYGHDAMGYMMDSQA 458
            ::.:|..||..|.:|:.||:.||.|||||     :.:.|:..:.|   .:....|..|.|.|.:
  Fly   255 TKGEKIMLAIITKMTLTQVSTWFANARRR-----LKKENKMTWEP---KNKTEDDDDGMMSDDE- 310

  Fly   459 HMMHRPPGDPG 469
              ..:..||.|
  Fly   311 --KEKDAGDGG 319

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
hth	NP_476576.1	Meis_PKNOX_N	127..211	CDD:465140
		Homeobox_KN	384..422	CDD:428673	17/37 (46%)
caup	NP_524046.2	Homeobox_KN	245..283	CDD:428673	17/37 (46%)
		IRO	455..472	CDD:214716