DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hth and Irx1

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001100801.1 Gene:Irx1 / 306659 RGDID:1309060 Length:480 Species:Rattus norvegicus


Alignment Length:196 Identity:50/196 - (25%)
Similarity:79/196 - (40%) Gaps:55/196 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 ARSPGA--GSTPGPLSQQPPALDTSDPDGKFLSSLNPSELTYDGRWCRREWSSPADARNADASRR 321
            |..|||  |..||.|:....|...:.                .||....|..:.|.|....:...
  Rat    14 AAGPGAYGGERPGMLAAAAAAAAAAS----------------SGRPGTAELGAGAGAAAVTSVLG 62

  Fly   322 LYSSV--FLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASG---------------------- 362
            :|::.  :.|:| |: ::....|::.|:.|..|:..|..|..|                      
  Rat    63 MYAAAGPYAGAP-NY-SAFLPYAADLSLFSQMGSQYELKDNPGVHPATFAAHTTPAYYPYGQFQY 125

  Fly   363 -----KKNQKKRGIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRR 422
                 .||..:.      :|:.|:|||.:|..:|||::.:|..||..|.:|:.||:.||.|||||
  Rat   126 GDPGRPKNATRE------STSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 184

  Fly   423 I 423
            :
  Rat   185 L 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140
Homeobox_KN 384..422 CDD:428673 17/37 (46%)
Irx1NP_001100801.1 Homeobox_KN 146..184 CDD:428673 17/37 (46%)
DNA_pol_phi <195..257 CDD:461488
IRO 309..326 CDD:214716
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.