DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and Pbx1

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_006496762.1 Gene:Pbx1 / 18514 MGIID:97495 Length:450 Species:Mus musculus


Alignment Length:419 Identity:85/419 - (20%)
Similarity:129/419 - (30%) Gaps:174/419 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 PHMTHAAAAAATVGMHGY-------HSGAGG-HGTPSHVSPVGNHLM-------GAIPEVHKRDK 94
            |.:.|:.|.   |||.|:       ..|||| .|.......:|:.|.       .::.|...| |
Mouse     5 PRLMHSHAG---VGMAGHPGLSQHLQDGAGGTEGEGGRKQDIGDILQQIMTITDQSLDEAQAR-K 65

  Fly    95 DAIYEHPLFPLLALIFEKCELATCT-----------PREP------------GVQGGDVCSSESF 136
            .|:..|.:.|  ||....||:...|           |.:|            ||.|.:.....:.
Mouse    66 HALNCHRMKP--ALFNVLCEIKEKTVLSIRGAQEEEPTDPQLMRLDNMLLAEGVAGPEKGGGSAA 128

  Fly   137 NEDIAMFSKQIRSQKPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMP 201
            ....|..|....|......:|     ...:..|:.:.:..||||..:.|:.|....::.|:    
Mouse   129 AAAAAAASGGAGSDNSVEHSD-----YRAKLSQIRQIYHTELEKYEQACNEFTTHVMNLLR---- 184

  Fly   202 IDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVRPPSSSLSYGGAMNDDARSPGAGS 266
                  |:..|:|                                                    
Mouse   185 ------EQSRTRP---------------------------------------------------- 191

  Fly   267 TPGPLSQQPPALDTSDPDGKFLSSLNPSELTYDGRWCRREWSS---PADARNADASRRLYSSVFL 328
                                    ::|.|:........|::||   .......:|...|.|. ||
Mouse   192 ------------------------ISPKEIERMVSIIHRKFSSIQMQLKQSTCEAVMILRSR-FL 231

  Fly   329 GSPDNFGTSASGDASNASIGSGEGTGEEDDDASGKKNQKKRGIFPKVATNILRAWLFQHLTHPYP 393
                                          ||     ::||..|.|.||.||..:.:.||::|||
Mouse   232 ------------------------------DA-----RRKRRNFNKQATEILNEYFYSHLSNPYP 261

  Fly   394 SEDQKKQLAQDTGLTILQVNNWFINARRR 422
            ||:.|::||:..|:|:.||:|||.|.|.|
Mouse   262 SEEAKEELAKKCGITVSQVSNWFGNKRIR 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140 14/83 (17%)
Homeobox_KN 384..422 CDD:428673 19/37 (51%)
Pbx1XP_006496762.1 PBC 42..232 CDD:461052 43/314 (14%)
homeodomain 234..294 CDD:238039 28/57 (49%)

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