DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and irx-1

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_492533.2 Gene:irx-1 / 172789 WormBaseID:WBGene00007984 Length:377 Species:Caenorhabditis elegans


Alignment Length:229 Identity:65/229 - (28%)
Similarity:88/229 - (38%) Gaps:35/229 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 STPGPLSQQPPALDTSDPDGKFLSSLNPSELTYDGRWCRREWSSPADARNADASRRLYSSVFLGS 330
            :||...:..||   ||.||.  |..:.|..|.  |::......:...|..|.|:.....:...|.
 Worm    14 TTPQTTTPAPP---TSAPDA--LRGILPPNLL--GQFHFHPAMAQVLAAQAQAAAAAQQATLAGF 71

  Fly   331 P--DNFGTSASGDAS-NASIGSGEGTGEE-DDDAS------GKKNQKKRGIFPKVATNILRAWLF 385
            |  ..|......|.. ...:|.|.|.... ..||.      |....|||.. .:.||..|:.||.
 Worm    72 PGVPMFPHGIPADLKPEMLLGGGPGPMPMFFSDAHRLYHPYGLDGIKKRNA-TREATAPLKDWLH 135

  Fly   386 QHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVYTPHPGPSGYGHDAM 450
            .|..:||||:..|..||..||:|:.||:.||.|||||     :.:.|:..::|. ...|.|.|. 
 Worm   136 SHRKNPYPSKADKVMLAVGTGMTLTQVSTWFANARRR-----LKKENKMTWSPQ-NRRGDGCDD- 193

  Fly   451 GYMMDSQAHMMHRPPGDPGFHQ--------GYPH 476
              ..|.....|:||......:.        |.||
 Worm   194 --DEDDDDDDMNRPSSSTSINSERKGESLFGKPH 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140
Homeobox_KN 384..422 CDD:428673 19/37 (51%)
irx-1NP_492533.2 Homeobox_KN 134..172 CDD:428673 19/37 (51%)
IRO 259..>273 CDD:214716
Blue background indicates that the domain is not in the aligned region.

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