DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and meis1b

DIOPT Version :9

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_571968.1 Gene:meis1b / 170446 ZFINID:ZDB-GENE-020122-1 Length:388 Species:Danio rerio


Alignment Length:495 Identity:249/495 - (50%)
Similarity:284/495 - (57%) Gaps:126/495 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAQPRYDDGLHGYGMDSGAAAAAMY-DPHAG------HRPPGLQGLPSHHSPHMTHAAAAAATVG 58
            ||| ||:|..| ||||.....:.|| ||||.      |...|.| |.||..||..|..|...::|
Zfish     1 MAQ-RYEDIPH-YGMDGVGIPSTMYGDPHAARSMQAVHLNHGPQ-LHSHQYPHTAHTNAMPPSMG 62

  Fly    59 MHGYHSGAGGHGTPSHVSPVGNHLMGAIPEVHKRDKDAIYEHPLFPLLALIFEKCELATCTPREP 123
                                     .::.:..|||||:||.||||||||||||||||||||||||
Zfish    63 -------------------------SSVNDALKRDKDSIYGHPLFPLLALIFEKCELATCTPREP 102

  Fly   124 GVQGGDVCSSESFNEDIAMFSKQIRSQKPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNF 188
            ||.|||||||||||||||:|:||||::||.::::||:|:||:|||||||||||||||||||||||
Zfish   103 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNF 167

  Fly   189 CHRYISCLKGKMPIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVRPPSSSLSYGG 253
            |||||||||||||||||||:|             ||.|.:||...|..:.      |....|: .
Zfish   168 CHRYISCLKGKMPIDLVIDDR-------------EGGSKSDSEEITRSSG------PLDQTSW-N 212

  Fly   254 AMNDDARSPGAGSTPGPLSQQPPALDTSDPDGKFLSSLNPSELTYDGRWCRREWSSPADARNADA 318
            ..:||..|..:|.||||.|            |...|.                            
Zfish   213 RDHDDTASTRSGGTPGPSS------------GGHTSH---------------------------- 237

  Fly   319 SRRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGKKNQKKRGIFPKVATNILRAW 383
                       |.||  :|..||..:.|:.| ..||::||....||..|||||||||||||:|||
Zfish   238 -----------SGDN--SSEQGDGLDNSVAS-PSTGDDDDPDKEKKRNKKRGIFPKVATNIMRAW 288

  Fly   384 LFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAV-----YTPHPGPS 443
            ||||||||||||:|||||||||||||||||||||||||||||||||||||||     |.|...|.
Zfish   289 LFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAPYNPDGQPM 353

  Fly   444 GYGHDAMGYMMDSQAHMMHRPPG---DPGFHQGYP---HY 477
            |      |::||.|.||..||||   ..|.:.|..   ||
Zfish   354 G------GFVMDGQQHMGIRPPGPMSGMGMNMGMEGQWHY 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:406806 70/83 (84%)
Homeobox_KN 383..422 CDD:399131 37/38 (97%)
meis1bNP_571968.1 Meis_PKNOX_N 106..190 CDD:406806 70/96 (73%)
Homeobox_KN 288..327 CDD:399131 37/38 (97%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170587113
Domainoid 1 1.000 157 1.000 Domainoid score I4115
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H86803
Inparanoid 1 1.050 392 1.000 Inparanoid score I1935
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1126341at2759
OrthoFinder 1 1.000 - - FOG0000410
OrthoInspector 1 1.000 - - otm24280
orthoMCL 1 0.900 - - OOG6_105229
Panther 1 1.100 - - O PTHR11850
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2315
SonicParanoid 1 1.000 - - X78
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.790

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