DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and pbx1

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_012816136.1 Gene:pbx1 / 100216094 XenbaseID:XB-GENE-1217592 Length:454 Species:Xenopus tropicalis


Alignment Length:191 Identity:43/191 - (22%)
Similarity:63/191 - (32%) Gaps:78/191 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 PADARNADASRRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGKKNQ-------- 366
            |||.:.......|.:....|.....|::|:..|:.||.|:|.....|..|...|.:|        
 Frog   100 PADPQLMRLDNMLLAEGVAGPEKGGGSAAAAAAAAASGGAGADNSAEHSDYRAKLSQIRQIYHTE 164

  Fly   367 ----------------------------------------------------------------- 366
                                                                             
 Frog   165 LEKYEQACNEFTTHVMNLLREQSRTRPISPKEIERMVSIIHRKFSSIQMQLKQSTCEAVMILRSR 229

  Fly   367 -----KKRGIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRR 422
                 :||..|.|.||.||..:.:.||::|||||:.|::||:...:|:.||:|||.|.|.|
 Frog   230 FLDARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCAITVSQVSNWFGNKRIR 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140
Homeobox_KN 384..422 CDD:428673 18/37 (49%)
pbx1XP_012816136.1 PBC 42..232 CDD:461052 16/131 (12%)
homeodomain 234..294 CDD:238039 27/57 (47%)
Blue background indicates that the domain is not in the aligned region.

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