DRSC/TRiP Functional Genomics Resources

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Protein Alignment hth and irx4

DIOPT Version :10

Sequence 1:NP_476576.1 Gene:hth / 41273 FlyBaseID:FBgn0001235 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001263621.1 Gene:irx4 / 100038068 XenbaseID:XB-GENE-480570 Length:496 Species:Xenopus tropicalis


Alignment Length:242 Identity:58/242 - (23%)
Similarity:92/242 - (38%) Gaps:83/242 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 ASTPDVRPPSSSL-----SYGGAMNDDARSPGAGSTPGPLSQQPPALDTSDPDGKFLSSLNPSEL 296
            :|||.....::||     |.|.:::|.|.:..|         |.|....                
 Frog    11 SSTPQFLMTTNSLSTCCESSGRSLSDSAAAASA---------QTPVYCP---------------- 50

  Fly   297 TYDGRWCRREWSSPADAR---NADASRRLYSSVF-----LGSPDNFGTSASGDASNASIGSGEGT 353
            .|:.|..       |.||   |:.|:..:|.|.:     .|:...:|..||...|..:..|.:||
 Frog    51 VYESRLL-------ATARHELNSAAALGVYGSPYTSTQGYGNYVTYGADASAFYSLNAFESKDGT 108

  Fly   354 GEED---------------------------DDASGKKNQKKRGIFPKVATNILRAWLFQHLTHP 391
            |...                           |.::.:||..:.      .|:.|:|||.:|..:|
 Frog   109 GSAHAGIPQTAAYYPYEHTLSQYQYDRYGTMDGSTRRKNATRE------TTSTLKAWLQEHRKNP 167

  Fly   392 YPSEDQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVYTP 438
            ||::.:|..||..|.:|:.||:.||.|||||     :.:.|:..:.|
 Frog   168 YPTKGEKIMLAIITKMTLTQVSTWFANARRR-----LKKENKMTWPP 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hthNP_476576.1 Meis_PKNOX_N 127..211 CDD:465140
Homeobox_KN 384..422 CDD:428673 17/37 (46%)
irx4NP_001263621.1 Homeobox_KN 160..198 CDD:428673 17/37 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..236 2/7 (29%)
IRO 356..369 CDD:214716
Blue background indicates that the domain is not in the aligned region.

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