DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rrp46 and Exosc5

DIOPT Version :9

Sequence 1:NP_650001.2 Gene:Rrp46 / 41270 FlyBaseID:FBgn0037815 Length:233 Species:Drosophila melanogaster
Sequence 2:NP_001100963.2 Gene:Exosc5 / 308441 RGDID:1307861 Length:235 Species:Rattus norvegicus


Alignment Length:208 Identity:81/208 - (38%)
Similarity:114/208 - (54%) Gaps:0/208 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLPQVTDR 78
            ||...||.|.|||.|||..:.||.|.::..|.||.|||......:.:.||...|||.|||.|.::
  Rat    28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEK 92

  Fly    79 IREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLPLKYSFAAVHA 143
            .||..||:..|..:|...|||:.::|.:|.:.|.||:.||.:|.||:|::..|:|::..|..|..
  Rat    93 SRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVPMRALFCGVTC 157

  Fly   144 IINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGSFKIAQFNDIECLCLAASAEIFQ 208
            .::..|..||||...:....||..|||.||.|..||:..|||.:..|:.........|||..||:
  Rat   158 ALDPDGNLVLDPTTKQEKEARAILTFALDSAEQKLLMSATKGLYSDAELQQCLAAAQAASQHIFR 222

  Fly   209 FYRNQVAKYHGRS 221
            |||..:.:.:.:|
  Rat   223 FYRESLQRRYSKS 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rrp46NP_650001.2 Rph 10..215 CDD:223761 80/200 (40%)
RNase_PH_RRP46 14..211 CDD:206777 78/196 (40%)
Exosc5NP_001100963.2 ECX1 10..232 CDD:131120 80/203 (39%)
RNase_PH_RRP46 28..225 CDD:206777 78/196 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345937
Domainoid 1 1.000 99 1.000 Domainoid score I6878
eggNOG 1 0.900 - - E1_COG0689
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5981
Inparanoid 1 1.050 151 1.000 Inparanoid score I4275
OMA 1 1.010 - - QHG53663
OrthoDB 1 1.010 - - D1129417at2759
OrthoFinder 1 1.000 - - FOG0004463
OrthoInspector 1 1.000 - - oto95516
orthoMCL 1 0.900 - - OOG6_103234
Panther 1 1.100 - - LDO PTHR11953
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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