DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rfx and RFX1

DIOPT Version :9

Sequence 1:NP_001247023.2 Gene:Rfx / 41266 FlyBaseID:FBgn0020379 Length:919 Species:Drosophila melanogaster
Sequence 2:XP_011526467.1 Gene:RFX1 / 5989 HGNCID:9982 Length:1089 Species:Homo sapiens


Alignment Length:1066 Identity:369/1066 - (34%)
Similarity:479/1066 - (44%) Gaps:286/1066 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TTRLAPQRQFILSTRSAIVDATSP----------------------PEDSAEEQQQLTVEV-ESA 43
            |....||.|::...:|....|..|                      |..|...||.:.|.| |.|
Human    45 TAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPSQPTGAPTPSPAPQQYIVVTVSEGA 109

  Fly    44 TNGVITNSTTSPPPHAEQFEFCTEDGVVVSATLEDVMTQVK-------LFPL-LQNCQLLQKKLV 100
            .....|.|..||...|.|....|:....|..|.:.::.|..       :.|| |.|.|:.|:.| 
Human   110 MRASETVSEASPGSTASQTGVPTQVVQQVQGTQQRLLVQTSVQAKPGHVSPLQLTNIQVPQQAL- 173

  Fly   101 DEDDDSTGVGATDADQLEVISVVLPMDAEDSTSDAHLHG-------------HVVNSSSDTMGTI 152
                         ..|..|:....| .::.......:||             ...:|||.|.|..
Human   174 -------------PTQRLVVQSAAP-GSKGGQVSLTVHGTQQVHSPPEQSPVQANSSSSKTAGAP 224

  Fly   153 TTTEPNGTT---VTHSIPIHS-----MADLAAIKDG------------VDLAQQVANGQVTVVQT 197
            |.|.|....   |..|:|:..     .|...|.|.|            |.:||:.:..|....:.
Human   225 TGTVPQQLQVHGVQQSVPVTQERSVVQATPQAPKPGPVQPLTVQGLQPVHVAQESSGSQFPARKA 289

  Fly   198 TEDDD------------------------------------------------------------ 202
            .:.|.                                                            
Human   290 EQRDPRPTPPPEPPPRPPACSGEAPQLGSPEPPPPHYEPGAEQWVELVGVLPPHLLLPQQKVVFE 354

  Fly   203 --------------------------GTPFITVTVSGQEQ-------NYQVQYV---DSELYHSN 231
                                      ||....:.|...:|       :.|||||   |:....|.
Human   355 PLSRLPARASPDQRVRIQRIPQVLVFGTAATALKVQQLQQVPVPHVYSSQVQYVEGGDASYTASA 419

  Fly   232 SSQTQMTYPFCPVGDYQGNGQTAYYSTTGQYGTTSSAGGSSNGAHSTTLPYLVPVEEGILLNGSA 296
            ...:..:||..|:  |.....|:||...|.....|:...|...|.|.::|..|   .|..:..|:
Human   420 IRSSTYSYPETPL--YTQTASTSYYEAAGTATQVSTPATSQAVASSGSMPMYV---SGSQVVASS 479

  Fly   297 HSLSQSQSQSHGRDSPHSLTVSSRDWERDADRVNGTNRHWVQEVAYIQEAQSTPQTPTSTTTTHS 361
            .|.....|.|.|                                                   ..
Human   480 TSTGAGASNSSG---------------------------------------------------GG 493

  Fly   362 ASGGSLGTGGGGASPDSDQSA----------------LGSSN-------KIASATIKWLSRNYET 403
            .|||..|.||||....|..:.                |||::       :.:.||::||..||||
Human   494 GSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQWLLDNYET 558

  Fly   404 ADGVSLPRSTLYNHYMQHCSEHKLEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKP 468
            |:||||||||||.||:.||.|.||||||||||||||||||.|||||||||||||||||||:|||.
Human   559 AEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKA 623

  Fly   469 GSLLNSQAMDDKQMLAAGYGPSSDGTGGPGSGPMVSVTSSTAGQLTGSNGLGGGHGQRHSNGTKK 533
            .|.| .:.|:|:|.:|....|.|..........|..:|:..|            .||:.|.|...
Human   624 SSPL-LRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGMTNGVA------------VGQQPSTGLSD 675

  Fly   534 HTFKPETYEACIQYIGDGTSALPSFPPIELNHSFNSE-LTLEDVDTFRGLYREHCESFLDAVLNL 597
            .:.:.:.|:   |:: |.:.:||.|..::|......| :...|:..|:.|||||||:.:|.::||
Human   676 ISAQVQQYQ---QFL-DASRSLPDFTELDLQGKVLPEGVGPGDIKAFQVLYREHCEAIVDVMVNL 736

  Fly   598 EFNTVEFLLRDFWRASDNNNLDECEE----------EKYLSKTKLYLLCHCAEVQKFVREVDYQF 652
            :|..||.|.:.|||    .||.:..|          ||.|.|..|.||.....|.::.:..|...
Human   737 QFTLVETLWKTFWR----YNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPVLQWTKHCDNVL 797

  Fly   653 YQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVSAFCQTLRRYT 717
            ||..|:::||||||.||:|||||||||||:||.||..:|:.:||::.::|.:|..||.|||||||
Human   798 YQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRVKVAAAGAFAQTLRRYT 862

  Fly   718 SLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQRLESDFKAALQQQSS 782
            |||||||||||||||.|||:|||||||||||.||||||:||.:|...||||||.|||..||||:|
Human   863 SLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKVTLQQQNS 927

  Fly   783 LEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLF 847
            |||||:||..||...::.|.|...:.:||:.|||||||||||:|||||||||:|||||||||||:
Human   928 LEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLY 992

  Fly   848 DEYMFYLVEHKIAEAQDKTAIAVICE 873
            ||||:||:||::|:|:.:|.|||:.|
Human   993 DEYMYYLIEHRVAQAKGETPIAVMGE 1018

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfxNP_001247023.2 RFX_DNA_binding 393..466 CDD:280427 60/72 (83%)
RFX1XP_011526467.1 TFIIA 75..>280 CDD:281188 48/219 (22%)
RFX1_trans_act 224..481 CDD:282451 42/261 (16%)
RFX_DNA_binding 545..621 CDD:280427 61/75 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165159859
Domainoid 1 1.000 386 1.000 Domainoid score I808
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 529 1.000 Inparanoid score I1224
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D278246at33208
OrthoFinder 1 1.000 - - FOG0000699
OrthoInspector 1 1.000 - - otm41924
orthoMCL 1 0.900 - - OOG6_102578
Panther 1 1.100 - - O PTHR12619
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1282
SonicParanoid 1 1.000 - - X291
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1211.930

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