Protein Alignment Rfx and rfx6

DIOPT Version :9

• Sequence 1: NP_001247023.2
• Gene: Rfx / 41266
• FlyBaseID: FBgn0020379
• Length: 919
• Species: Drosophila melanogaster
• Sequence 2: XP_021324218.1
• Gene: rfx6 / 556925
• ZFINID: ZDB-GENE-041014-299
• Length: 930
• Species: Danio rerio
• Alignment Length: 541
• Identity: 173/541 - (31%)
• Similarity: 260/541 - (48%)
• Gaps: 86/541 - (15%)

  Fly   388 KIASATIKWLSRNYETADGVSLPRSTLYNHYMQHCSEHKLEPVNAASFGKLIRSVFSGLRTRRLG 452
            |....|::||..||...:||.|||..||.||:..|.:.||:|..||:|||.||..|..|.|||||
Zfish    51 KQTQLTLQWLEDNYIVCEGVCLPRCILYAHYLDFCRKEKLDPACAATFGKTIRQKFPLLTTRRLG 115

  Fly   453 TRGNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYGPSSDGTGGPGSGPMVSVTSSTAGQLTGSN 517
            |||:||||||||.||..|              |.|.....|.|         :|..:..:|...
Zfish   116 TRGHSKYHYYGIGIKESS--------------AYYHSVYSGKG---------LTRFSGSKLKNE- 156

  Fly   518 GLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTS--ALPSFPP--------IELNHSFNSELT 572
               ||..:::|..:|..|..||...|....:.|..|  .:.|||.        |:|..|.:..|.
Zfish   157 ---GGFTRKYSLSSKTGTLLPEFPSAQHLVLQDSVSKEKVCSFPVKNTVYMKCIDLLTSDSVLLL 218

  Fly   573 LEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCH 637
            :..|||...:|:.||:..||..:|:.|..::..|..||:....:.|...|....:.     :.|.
Zfish   219 ICQVDTLIMMYKTHCQCILDNAINVNFEEIQNFLLHFWQGMPEHLLPLLENPVIVD-----IFCV 278

  Fly   638 CAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIK 702
            |          |...|:...||:||..::.:|.:|...||||||:.|.|:..|:..:||.|::.|
Zfish   279 C----------DSILYKVLTDVLIPATMQDMPESLLADIRNFAKHWEHWMLSSLENLPEILSEKK 333

  Fly   703 TSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWVSQCAPAVVQ 767
            ......|..:|:|.||..||||.||..|.:...::.|::|:::||.:::..||..      :|..
Zfish   334 VPIARRFVSSLKRQTSFLHLAQIARPALFDQIVVTSMVNDIDKVDLNSIGSQALL------SVTN 392

  Fly   768 RLESDF-------------KAALQQQSSLEQWASWLQLVVESAM---EEYNGKPTYARAARQFLL 816
            ..:|||             |..|::.:::|.:..||..|||..:   .:.||:....| |:.|||
Zfish   393 DQDSDFYSEYDSISVFQELKDLLRKNATVESFIEWLDSVVEQKVIKPSKQNGRSVKKR-AQDFLL 456

  Fly   817 KWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVICERMKKDMDF 881
            ||||:.:.::.:|||.:|:|||||||||:|.|||:...:|.:....:::. :..:.|:..:..|
Zfish   457 KWSFFGARVMHNLTLNNATSFGSFHLIRMLLDEYILLAIETQFNNDKEQD-LQNLLEKYMRSAD- 519

  Fly   882 EFECQFAYITSDTEHQTTPSS 902
                     .|......:|||
Zfish   520 ---------ASKATFTASPSS 531

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rfx	NP_001247023.2	RFX_DNA_binding	393..466	CDD:280427	43/72 (60%)
rfx6	XP_021324218.1	RFX_DNA_binding	56..129	CDD:308073	43/72 (60%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D278246at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X291
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.920