DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rfx and rfx2

DIOPT Version :9

Sequence 1:NP_001247023.2 Gene:Rfx / 41266 FlyBaseID:FBgn0020379 Length:919 Species:Drosophila melanogaster
Sequence 2:NP_001013296.1 Gene:rfx2 / 503590 ZFINID:ZDB-GENE-050227-4 Length:734 Species:Danio rerio


Alignment Length:743 Identity:316/743 - (42%)
Similarity:425/743 - (57%) Gaps:138/743 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   214 QEQNY---QVQYVD-SELYHSNSSQTQMTYPFCPVGDYQGNGQ-TAYYSTTGQYGTTSSAGGS-- 271
            |.|:|   |||||: :|..:.|.: .:..|.:.|.....|.|. :||:.        |.|||:  
Zfish    68 QVQHYHSQQVQYVEGAEAVYPNGT-IRAAYSYNPESQLYGQGSGSAYFD--------SQAGGAQV 123

  Fly   272 ----SNGAHSTTLPYLVPVEEG---ILLNGSAHSLSQSQSQSHG--RDSPHSLTVSSRDWERDAD 327
                |:|...|.....:.::.|   |:.:|||:.:       ||  ....|..:.|||       
Zfish   124 TTVVSSGGVPTHGMVGIAMDVGGSQIISSGSAYLI-------HGGMEGGRHHTSHSSR------- 174

  Fly   328 RVNGTNRHWVQEVAYIQEAQSTPQTPTSTTTTHSASGGSLGTGGGGASPDSDQSALGSSNKIASA 392
               .::......:..:|:::.        ..||.:|                         :.::
Zfish   175 ---SSSAMLEMAIENLQKSEG--------IATHKSS-------------------------LLNS 203

  Fly   393 TIKWLSRNYETADGVSLPRSTLYNHYMQHCSEHKLEPVNAASFGKLIRSVFSGLRTRRLGTRGNS 457
            .::||..|||||:|||||||:|||||::||.|.||:|||||||||||||||.|||||||||||||
Zfish   204 HLQWLLDNYETAEGVSLPRSSLYNHYLRHCQEQKLDPVNAASFGKLIRSVFMGLRTRRLGTRGNS 268

  Fly   458 KYHYYGIRIKPGSLLNSQAMDDKQMLAAGYGP-----------SSDGTGGPGSGPMVSVTSSTAG 511
            ||||||||:||.|.|| :..:|.|.:|....|           ..||.|.       |:.|    
Zfish   269 KYHYYGIRLKPDSPLN-RMQEDTQYMAMRQTPVHQKQRFKPFHKMDGMGD-------SLNS---- 321

  Fly   512 QLTGSNGLGGGHGQRHSNGTKKHTFKPETYEAC---IQYIGDGTSALPSFPPIELNH-SFNSELT 572
                        |.:|.:.|.:.:...:    |   .||| |.:..||.||.::|.. .....::
Zfish   322 ------------GSQHLSSTPEQSVAAQ----CQHHQQYI-DVSHVLPPFPSLDLGSCPLPESIS 369

  Fly   573 LEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWR----ASDN-----NNLDECEEEKYLS 628
            :.||...:..||.|||:.||.|:||:|:.:|.|.:.||.    :||.     |:.::.|:.:...
Zfish   370 MTDVKKLQSSYRIHCEATLDVVMNLQFHLIEKLWQTFWHSTAPSSDGATTIPNSEEDVEDIRGFP 434

  Fly   629 KTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLG 693
            :.||..||....:::::|..|:..||..|:::||||||.:|:.||||||||||:||.||..:|..
Zfish   435 RDKLITLCKYEPIKQWMRSCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTSAMTN 499

  Fly   694 VPEQLAQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAAWV 758
            .|.::...|.:.||||.||||||||||||||||||||||.:||:|||||||||||.||||||:||
Zfish   500 FPPEIISTKAAVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 564

  Fly   759 SQCAPAVVQRLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSS 823
            .||..:||||||.||||.|||||||:|||:||..||...::.|:|..::.|||||||||||||||
Zfish   565 CQCDESVVQRLELDFKATLQQQSSLDQWAAWLDNVVNQVLKPYDGSLSFPRAARQFLLKWSFYSS 629

  Fly   824 MIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVICERMKKDMDFEFECQFA 888
            |:|||||||||:|||||||||||:||||||||||::|:|..:|.|||:         .||....:
Zfish   630 MVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVM---------GEFSDLSS 685

  Fly   889 YITSDTEHQTTPS-SASSGGDVGNEAKR 915
            .:.|..|..|:.| ..:|.||:...::|
Zfish   686 LMPSLKEQDTSFSDDMTSDGDMSRMSER 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfxNP_001247023.2 RFX_DNA_binding 393..466 CDD:280427 59/72 (82%)
rfx2NP_001013296.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31
RFX1_trans_act 11..158 CDD:282451 28/98 (29%)
RFX_DNA_binding 205..277 CDD:280427 59/71 (83%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 694..722 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596119
Domainoid 1 1.000 389 1.000 Domainoid score I755
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 528 1.000 Inparanoid score I1191
OMA 1 1.010 - - QHG49084
OrthoDB 1 1.010 - - D278246at33208
OrthoFinder 1 1.000 - - FOG0000699
OrthoInspector 1 1.000 - - otm25965
orthoMCL 1 0.900 - - OOG6_102578
Panther 1 1.100 - - O PTHR12619
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1282
SonicParanoid 1 1.000 - - X291
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1312.940

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