DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rfx and Rfx8

DIOPT Version :9

Sequence 1:NP_001247023.2 Gene:Rfx / 41266 FlyBaseID:FBgn0020379 Length:919 Species:Drosophila melanogaster
Sequence 2:XP_038940474.1 Gene:Rfx8 / 501127 RGDID:1560724 Length:597 Species:Rattus norvegicus


Alignment Length:600 Identity:137/600 - (22%)
Similarity:231/600 - (38%) Gaps:166/600 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   346 AQSTPQTPTSTTTTHSASGGSLGTGGGGASPDSDQSALGSSNKIASATIKWLSRNYETADGVSLP 410
            |::.|.:|               .||.|               :....|:||..|:...:|.|:|
  Rat     2 AEAVPASP---------------AGGRG---------------LHRGIIQWLVDNFCICEGFSVP 36

  Fly   411 RSTLYNHYMQHCSEHKLEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPGS----- 470
            |..:|..|::.|.:.....||.|:||||:|.||..|.||||||||:::|||.||.||..|     
  Rat    37 RCLMYEIYVETCGQSAQNQVNPATFGKLVRLVFPDLGTRRLGTRGSARYHYDGIYIKKSSFFYAH 101

  Fly   471 ---LLNSQAMDDKQMLAAGYGP------------------SSDGTGGPGSGPMVSVTSSTAGQLT 514
               ||..::.....::|.|..|                  .:|..|.|.|               
  Rat   102 YCYLLGKKSCHSGDLVAFGKSPDFNNVLQQEETCESHSPIKTDPMGSPVS--------------- 151

  Fly   515 GSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSFPPIELNHSFNSELTLEDVDTF 579
                                     .:..|            .|...||.:.::.:|.:...|. 
  Rat   152 -------------------------PFRRC------------PFWEQELANKYSCKLVVFLADE- 178

  Fly   580 RGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEEEKYLSKTKLYLLCHCAEVQKF 644
               |..:|...|..|.|.|...||.|:..||::...:.:               :|....:|::.
  Rat   179 ---YCNYCRDILQYVRNQELEKVEDLITSFWKSLQQDTV---------------MLLSLPDVRQL 225

  Fly   645 VREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESMLGVPEQLAQIKTSAVSAF 709
            ....|.|.|:...|.::||.|..:.....:::|.|:|..::||..::.|.|..|...|...|:.|
  Rat   226 FGCYDMQLYKGLEDTLLPDFLEDVSIQYLKSVRLFSKRFKLWLLGALEGFPAILQISKLKEVTGF 290

  Fly   710 CQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRV----------------DFHNVQEQAAWV 758
            .:.|||.|.|:::|:..:.||:|..::..:.|||..:                ..|..:.::...
  Rat   291 VKRLRRKTYLSNMAKTMKMVLKNSRRVGLLKSDLRAIIREGTLDISKKVLEGDSGHEEEPESHTE 355

  Fly   759 SQCAPAVVQRLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFYSS 823
            .:|...::..||:....|    ..|...:|.||.:|   .:....|..:.:.|..|.|||:|..:
  Rat   356 MKCLGCLISLLETSTDLA----ELLNCVSSNLQALV---FQPSKSKEEFIKLAASFQLKWNFLLT 413

  Fly   824 MIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVICERMKKDMDFEFECQFA 888
            .:.:.:||....|||::||..||..||:.:::|..:.|.:::..:..:.:               
  Rat   414 AVSKAMTLSHRDSFGAWHLFHLLLLEYVIHILESCMEEEEEEEDLGSLQD--------------- 463

  Fly   889 YITSDTEHQTTPSSA 903
             :.||.:..|.|..|
  Rat   464 -LLSDDQFLTQPDQA 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfxNP_001247023.2 RFX_DNA_binding 393..466 CDD:280427 35/72 (49%)
Rfx8XP_038940474.1 RFX_DNA_binding 19..90 CDD:396712 33/70 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D346630at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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