DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rfx and sak1

DIOPT Version :9

Sequence 1:NP_001247023.2 Gene:Rfx / 41266 FlyBaseID:FBgn0020379 Length:919 Species:Drosophila melanogaster
Sequence 2:NP_594086.1 Gene:sak1 / 2543421 PomBaseID:SPAC3G9.14 Length:766 Species:Schizosaccharomyces pombe


Alignment Length:711 Identity:153/711 - (21%)
Similarity:261/711 - (36%) Gaps:205/711 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   282 YLVPVEEGILLNGSAHSLSQSQSQSHGRDSPHSLTVSSRDWERDADRVNGTNRHWVQEVAYIQEA 346
            :::|.||..|...|..|.|     :|.|.|         |.|::.:         ::.:|...|.
pombe    33 FMLPQEENFLNRPSITSES-----AHPRGS---------DLEQETE---------LKRLALEHEH 74

  Fly   347 QSTPQTPTSTTTTHSASGGSLGTGGGGASPDSDQSALGSSNKIASATIKWLSRNYETADGVSLPR 411
            .|...........|.:           |:.:..:...|         |.||.|..|.....::.|
pombe    75 YSLESLAEKLRMDHVS-----------ANSEKFRQVFG---------ICWLKRACEEQQDAAVQR 119

  Fly   412 STLYNHYMQHCSEHKLEPVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIK--------- 467
            :.:|.||::.|:...::|:|:||||||:|.:|..::|||||.||:|||||.||:::         
pombe   120 NQIYAHYVEICNSLHIKPLNSASFGKLVRLLFPSIKTRRLGMRGHSKYHYCGIKLRGQDSFRRLR 184

  Fly   468 ----------------------------------------PGSLLNSQAMDDKQMLAAGYGPSSD 492
                                                    |.| :|:.|:..|..:.    ||||
pombe   185 TFSDSSLSPVSCSSFPKPIPNHFENDVSSIQNTNQRVESSPAS-VNAAAIVRKSAVT----PSSD 244

  Fly   493 GTGGPGSGPMVSVT---SSTAGQLTGSNGLGGGH------GQRHSNGTKKHTFKPE--------- 539
                |.:.|..|:.   |.|..||..|......|      .|.:......|:..|.         
pombe   245 ----PYNSPPPSIPLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSSVPSPAPPRSVSQ 305

  Fly   540 -TY------EACIQYIGDGTSALPSFPP------IELNHSFNSELTLE-------------DVDT 578
             ||      :....::...:|.:|:..|      ..|.||...:|.|:             ||.:
pombe   306 PTYFSQPMPQFSSSFVPGTSSIVPTLHPASAQEDFNLQHSLFFKLKLKFLPPHKLPWIPSLDVSS 370

  Fly   579 F----------------------RGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDEC 621
            |                      ..:|..||.:.:::|..:...  :||       |:.:|....
pombe   371 FSLPPIDYYLNGPYDNVEAKSALMNIYSSHCITLIESVRYMHLK--QFL-------SEISNFPNS 426

  Fly   622 EEEKYLSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIW 686
                 ||.:.|.|| ......|::...|...|:..:.::.|..|:.:|..:...:|:.|:||...
pombe   427 -----LSPSLLALL-SSPYFTKWIERSDTVMYREILKLLFPMTLQVVPPPVLVLLRHLAENLVNH 485

  Fly   687 LCESMLGVPEQLAQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSD--------- 742
            :..........|.|:|:...:.|...|.|...:|..|.||...|.|.|....:.:|         
pombe   486 ISSIYASHSSCLLQVKSETAAIFSNLLSRLLRVNDTAHAAARFLANPADRHLICNDWERFVSTRF 550

  Fly   743 -LNRVDFHNVQEQAA----W---VSQCA-PA-VVQRLESDFKAA--LQQQSSLEQWASWLQLVVE 795
             ::|....|.:|..|    |   :|.|: |: ::..|:...:|:  ...:..|.|....|..:.:
pombe   551 IVHRELMCNDKEAVAALDEWYSILSTCSNPSELLDPLKDKHEASDTSMNRVELRQIDGVLDRMAD 615

  Fly   796 SAMEEYNGKPTYARAARQFLLKWSFYSSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVE 856
            ..:|..:..|:.  :.|.|||......:.::|::|:....:||:..:||...||||.::.|
pombe   616 FFLELPSRFPSC--SPRMFLLCLGALQTSVLREITVSGGEAFGALWVIRCWVDEYMTWVAE 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfxNP_001247023.2 RFX_DNA_binding 393..466 CDD:280427 34/72 (47%)
sak1NP_594086.1 RFX_DNA_binding 98..174 CDD:280427 35/84 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 81 1.000 Domainoid score I2320
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 136 1.000 Inparanoid score I1396
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000699
OrthoInspector 1 1.000 - - oto101820
orthoMCL 1 0.900 - - OOG6_102578
Panther 1 1.100 - - LDO PTHR12619
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1282
SonicParanoid 1 1.000 - - X291
TreeFam 00.000 Not matched by this tool.
109.990

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