DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rfx and Rfx1

DIOPT Version :9

Sequence 1:NP_001247023.2 Gene:Rfx / 41266 FlyBaseID:FBgn0020379 Length:919 Species:Drosophila melanogaster
Sequence 2:XP_011246631.1 Gene:Rfx1 / 19724 MGIID:105982 Length:1073 Species:Mus musculus


Alignment Length:1027 Identity:365/1027 - (35%)
Similarity:497/1027 - (48%) Gaps:228/1027 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PQRQFILSTRSAIVDATSPPEDSAEEQQQLTVEVESATNGVITNSTTSPPPHAEQFEFCT--EDG 69
            ||.|::...:|. ...|.||    ..|:|...|:.:|. .....:|.:|.|.|:|:...|  |..
Mouse    44 PQPQYVTELQSP-QPQTQPP----GSQKQYVAELPAAP-APSQPATPAPSPVAQQYIVVTVSEGA 102

  Fly    70 VVVSATLED-----------VMTQVKLFPLLQNCQLLQKKLVDEDDDSTGVGATDADQLEVISVV 123
            :..|.|:.:           |.|||     :|..|..|::|:.:.......|  ....|::.::.
Mouse   103 MRASETVSEASPSSTASQTGVPTQV-----VQQVQGTQQRLLVQASVQAKPG--HVSPLQLTNIQ 160

  Fly   124 LPMDA-------EDSTSDAHLHGHVV---------------------NSSSDTMGTITTTEPNGT 160
            :|..|       ..|.:.....|.|.                     ||:|.|.||...|     
Mouse   161 VPQQAIPTQHLVVQSPAPGTKSGQVSLTVHSAQQVHSAPERSPVQANNSTSKTAGTPAAT----- 220

  Fly   161 TVTHSIPIHSMADLAAIKDGVDLAQQVANGQVTVVQTTEDDDGTPFITVTVSGQEQNYQVQYVDS 225
              ...:.:||      ::..|.:.|     :.:|||.|......|...:||.|.:..:..|....
Mouse   221 --VQQLQVHS------VQQSVPVTQ-----ERSVVQATPQTKAGPVQQLTVQGLQPVHVAQESSG 272

  Fly   226 ELYHSNSSQTQMTYPFCP--------------------VGDYQGNGQTAYYST------------ 258
            ..:.:..::.|.|.|..|                    :|..|   |..:|..            
Mouse   273 SQFPARKAEQQETRPTPPPEPPPRPPGPGPVCCGEVLQLGSEQ---QPLHYEPGVEQWVELVGML 334

  Fly   259 -------------TGQYGTTSSAGGSSNGAHSTTLPYLVPVEEGILLNGSAHSLSQSQSQSHGRD 310
                         ..|.|.::.|        |..|...:.....:|:.|:|..:.|....    .
Mouse   335 PPHLLLPQQRVVFEPQRGLSARA--------SPDLRVRIHRMPQVLVFGTALKVQQLPQV----P 387

  Fly   311 SPHSLT-----VSSRDWERDADRVNGTNRHWVQEVAYIQEA-------------QSTPQT----- 352
            .||..:     |...|....|..:..:...:.:...|.|.|             .|||.|     
Mouse   388 VPHVYSSQVQYVEGGDASYTASAIRSSTYQYPETPIYTQTAGTSYYEASGTAAQVSTPATSQTVA 452

  Fly   353 ---------------PTSTTTTHSASGGSLGTGG-------GGASPDSDQSALGS---------- 385
                           .:|:::...||..|:|.||       ||.|..|..|..|:          
Mouse   453 SSGSVPMYVSGSPIVASSSSSEAGASNSSVGAGGNGGGGSSGGGSGGSSGSGAGTYVIQGGYMLG 517

  Fly   386 --------SNKIASATIKWLSRNYETADGVSLPRSTLYNHYMQHCSEHKLEPVNAASFGKLIRSV 442
                    :.:.:.||::||..|||||:||||||||||.||:.||.|.|||||||||||||||||
Mouse   518 NASQSYSHTTRASPATVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSV 582

  Fly   443 FSGLRTRRLGTRGNSKYHYYGIRIKPGSLLNSQAMDDKQMLAAGYGPSSDGTGGPGSGPMVSVTS 507
            |.|||||||||||||||||||:|||..|.| .:.|:|:|.:|....|.|..........|..|  
Mouse   583 FMGLRTRRLGTRGNSKYHYYGLRIKASSPL-LRLMEDQQHMAMRGQPFSQKQRLKPIQKMEGV-- 644

  Fly   508 STAGQLTGSNGLGGGHGQRHSNGTKKHTFKPETYEACIQYIGDGTSALPSFPPIELNHSFNSE-L 571
                    :||:..|   :.|.|....:.:.:.|:   |:: |.:.:||.|..::|......| :
Mouse   645 --------ANGVAVG---QQSTGLSDISAQVQQYQ---QFL-DASRSLPDFAELDLQGKVLPEGV 694

  Fly   572 TLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDFWRASDNNNLDECEE----------EKY 626
            ...|:..|:.|||||||:.:|.::||:|..||.|.:.|||    .||.:..|          ||.
Mouse   695 GPGDIKAFQVLYREHCEAIVDVMVNLQFTLVETLWKTFWR----YNLSQPSEAPPLAVHDEAEKR 755

  Fly   627 LSKTKLYLLCHCAEVQKFVREVDYQFYQNTVDVIIPDVLRSIPNALTQAIRNFAKNLEIWLCESM 691
            |.:..|.||.....|.::.:..|...||..|:::||||||.||:|||||||||||:||.||..:|
Mouse   756 LPRASLVLLSKFQPVLQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAM 820

  Fly   692 LGVPEQLAQIKTSAVSAFCQTLRRYTSLNHLAQAARAVLQNGAQISQMLSDLNRVDFHNVQEQAA 756
            :.:||::.::|.:|..||.||||||||||||||||||||||.|||:|||||||||||.||||||:
Mouse   821 VNIPEEMLRVKVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQAS 885

  Fly   757 WVSQCAPAVVQRLESDFKAALQQQSSLEQWASWLQLVVESAMEEYNGKPTYARAARQFLLKWSFY 821
            ||.:|...||||||.|||..||||:||||||:||..||...::.|.|...:.:||:.||||||||
Mouse   886 WVCRCEDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSSGFPKAAKLFLLKWSFY 950

  Fly   822 SSMIIRDLTLRSASSFGSFHLIRLLFDEYMFYLVEHKIAEAQDKTAIAVICE 873
            |||:|||||||||:|||||||||||:||||:||:||::|:|:.:|.|||:.|
Mouse   951 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGE 1002

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RfxNP_001247023.2 RFX_DNA_binding 393..466 CDD:280427 60/72 (83%)
Rfx1XP_011246631.1 RFX1_trans_act 209..467 CDD:398335 48/290 (17%)
RFX_DNA_binding 531..606 CDD:396712 61/74 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167850228
Domainoid 1 1.000 384 1.000 Domainoid score I814
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 527 1.000 Inparanoid score I1220
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D346630at2759
OrthoFinder 1 1.000 - - FOG0000699
OrthoInspector 1 1.000 - - otm43972
orthoMCL 1 0.900 - - OOG6_102578
Panther 1 1.100 - - O PTHR12619
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1282
SonicParanoid 1 1.000 - - X291
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1211.930

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