DRSC/TRiP Functional Genomics Resources

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Protein Alignment jumu and foxn1

DIOPT Version :9

Sequence 1:NP_524302.1 Gene:jumu / 41265 FlyBaseID:FBgn0015396 Length:719 Species:Drosophila melanogaster
Sequence 2:XP_017947285.2 Gene:foxn1 / 100485276 XenbaseID:XB-GENE-954872 Length:663 Species:Xenopus tropicalis


Alignment Length:688 Identity:176/688 - (25%)
Similarity:261/688 - (37%) Gaps:220/688 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 FSPKKNKTASSTQGRSGAVPSSP--SAERDQHKSHLTFSPA------------------QMKVSA 189
            |||..|:..:|   :||.|.:..  ::...|.:|:||||..                  |...|:
 Frog     8 FSPLDNEMVNS---QSGFVHNQELLASTIMQDQSNLTFSSGSLDNECSPINQTDDGILEQAGSSS 69

  Fly   190 GSMRRDQVMAH-IPKQISVVTGTGTTAPATMATNSVLQR---RNSSAVDAVRK---DLVTEL--- 244
            ..:..|...:| |..|........:.:|:..:....:|.   ..||..:..|:   |..||.   
 Frog    70 SCLHMDTYGSHTIDIQGERKNSDSSVSPSLSSPQEQIQMGFPSKSSPREVFRRYSCDDTTERGYS 134

  Fly   245 -----------RKAQSSPV-PNSLEELGKGKGSTLLNASVGATNTI----------------KLA 281
                       .|.|.|.| ||:|:.|      :|...:....|.|                ...
 Frog   135 NFIKDRNQFHPYKRQFSDVFPNTLDSL------SLAEKTFKEMNRIDTFEDVCPPPGPEHIEPFV 193

  Fly   282 PGIGGLT----FANSAAYQKLKQTSLVKSPGGISPGAGSNMGLK-----REDSNKRGLQAST--- 334
            |.:..::    :.||..|....:.|.:.        .||.:.:|     :::..:|...:.|   
 Frog   194 PHVPDISAEQAWCNSVQYNSTDEDSQIM--------LGSEVKMKSSVMCQQEKEQRMYWSQTQQI 250

  Fly   335 --TPKSIASAANSPHHQMQSNYSLGSPSSLSSSSASSPLGNVSNLVNIANNNTSGAGSGLVKPLQ 397
              ||:|.            ..||.|         .|.|:..:|         ||......:.|..
 Frog   251 YCTPQSF------------PQYSTG---------GSYPVTYIS---------TSHYPYQRIAPQA 285

  Fly   398 QKVKLPPVGSPFPKPAYSYSCLIALALKNSRAGSLPVSEIYSFLCQHFPYFENAPSGWKNSVRHN 462
            ......|:   :|||.||||.||.:|||||:.|||||||||:|:.:|||||:.||.|||||||||
 Frog   286 SMEAQQPL---YPKPIYSYSILIFMALKNSKTGSLPVSEIYNFMTEHFPYFKTAPDGWKNSVRHN 347

  Fly   463 LSLNKCFEKIERPATNGNQRKGCRWAMNPDRINKMDEEVQKWSRKDPAAIRGAMVYPQHLESL-- 525
            |||||||||:|. .:..:.||||.||:||.:|:||.||:|||.||||..:|.:|..|:.|:.|  
 Frog   348 LSLNKCFEKVEN-KSGSSSRKGCLWALNPAKIDKMQEELQKWKRKDPVTVRKSMAKPEDLDKLIG 411

  Fly   526 ERGE------MKHGSAD---------------------SDVELDSQSEIEESSDLEE-------- 555
            ||.|      :.|.:|.                     |.|.:..||..:.|:.|..        
 Frog   412 ERTEKLRSSLLAHSAAGLVNSPTMQLSMQQTPLCETTISPVPVSLQSMHDISASLHNNTHLSRQQ 476

  Fly   556 --------HEFEDTMVDAMLVEE---------EDEEEDGDDDEQIINDFDAEDERHANGNQANNL 603
                    |:.  ..:...::::         ...:...|...|.||..|:....|....|...:
 Frog   477 PPRYTPLPHDI--PQISPAMIQQPHGISQNHFSSPDNQNDLRAQPINPQDSPIPAHTPPLQTMKM 539

  Fly   604 PINH-PLLGQKSNDFDIEVGDLYDAIDIEDDKESVRRIISNDQHIIELNPADLNATDGYNQQPAL 667
            ...| |....:.|..::|                    :|||  |.:|||   :.|| ::.|.:|
 Frog   540 LSEHSPARTMQENFTEVE--------------------LSND--IDDLNP---SLTD-FDFQGSL 578

  Fly   668 KRARVDINYAIGPAGELEQQYGQKVKVQQVIQPQQHPP 705
            .....|.:..:.|.              .::.|...||
 Frog   579 WEELRDDSLVLDPL--------------NLVSPSPTPP 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jumuNP_524302.1 Forkhead 411..499 CDD:278670 60/87 (69%)
foxn1XP_017947285.2 COG5025 <288..540 CDD:227358 95/257 (37%)
FH_FOXN1 295..391 CDD:410830 66/96 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 141 1.000 Domainoid score I4684
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48803
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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