DRSC/TRiP Functional Genomics Resources

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Protein Alignment Timp and Timp1

DIOPT Version :9

Sequence 1:NP_731461.1 Gene:Timp / 41248 FlyBaseID:FBgn0025879 Length:210 Species:Drosophila melanogaster
Sequence 2:NP_001037849.1 Gene:Timp1 / 21857 MGIID:98752 Length:205 Species:Mus musculus


Alignment Length:209 Identity:55/209 - (26%)
Similarity:95/209 - (45%) Gaps:43/209 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LLLVAVFAFYGRPADACSCMPSHPQTHFAQADYVVQLRVLRKSDTIEPGRTT----YKVHIKRT- 71
            |||:::.|    .:.||||.|.||||.|..:|.|::.:.:...:..|   ||    ||:.:.:. 
Mouse    13 LLLLSLIA----SSKACSCAPPHPQTAFCNSDLVIRAKFMGSPEINE---TTLYQRYKIKMTKML 70

  Fly    72 --YKATSEARRMLRDGRLS-TPQDDAMCGI---NLDLGKVYIVAGRMPTLNI----CSYYKEYTR 126
              :||...|    .|.|.: ||..:::||.   :.:..:.:::.||:...|:    ||:...:..
Mouse    71 KGFKAVGNA----ADIRYAYTPVMESLCGYAHKSQNRSEEFLITGRLRNGNLHISACSFLVPWRT 131

  Fly   127 MTITERHGFSGGYAKATN-CTVTPCFGERCFKGRNYADT-CKWSP---FGK--CETNYSACMPHK 184
            ::..::..||..|:.... |||.||....|   :..:|| |.|:.   .|.  .::.:.||:|..
Mouse   132 LSPAQQRAFSKTYSAGCGVCTVFPCLSIPC---KLESDTHCLWTDQVLVGSEDYQSRHFACLPRN 193

  Fly   185 VQTVNGVISRCRWR 198
            .       ..|.||
Mouse   194 P-------GLCTWR 200

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
TimpNP_731461.1 TIMP 26..197 CDD:279332 49/192 (26%)
Timp1NP_001037849.1 NTR 25..199 CDD:128502 48/190 (25%)
Involved in metalloproteinase-binding. /evidence=ECO:0000250|UniProtKB:P16035 25..28 2/2 (100%)