DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn and SYN3

DIOPT Version :9

Sequence 1:NP_731459.2 Gene:Syn / 41247 FlyBaseID:FBgn0004575 Length:1041 Species:Drosophila melanogaster
Sequence 2:NP_001356836.1 Gene:SYN3 / 8224 HGNCID:11496 Length:580 Species:Homo sapiens


Alignment Length:645 Identity:237/645 - (36%)
Similarity:330/645 - (51%) Gaps:127/645 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VNFLKRRFSSGDLSSEVDDVDPNS-LPPAARPIQDQPTKPPVAGGPPNMPPPP--APGQPAGAAP 75
            :|||:||.|.....:.:    ||. :....||  |..|..|.:.......|.|  |.....|::.
Human     1 MNFLRRRLSDSSFMANL----PNGYMTDLQRP--DSSTSSPASPAMERRHPQPLAASFSSPGSSL 59

  Fly    76 ELSLSFGAGKTP-ATAAPAPPRGVSAPTSPAKSRESLLQRVQSLTGAARDQGASILGAAVQSATQ 139
            ..|||....:.| ||:....|.|.|.|         ::||.:                       
Human    60 FSSLSSAMKQAPQATSGLMEPPGPSTP---------IVQRPR----------------------- 92

  Fly   140 RAPAFSKDKYFTLLVLDDQNTDWSKYFRGRRLHGDFDIRVEQAEFRDITVVSSADTGPVVTMAAY 204
                       .|||:||.:|||||||.|::::|:.:||||||||.::.:.:....|.:|.|...
Human    93 -----------ILLVIDDAHTDWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVV 146

  Fly   205 RSGTR-VARSFRPDFVLIRQPPRDGS--SDYRSTILGLKYGGVPSINSLHSIYQFQDKPWVFSHL 266
            |:||: |:|||:|||:|:||.....:  .||||.::||:|||:|::|||:|:|.|..||||||.|
Human   147 RNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQL 211

  Fly   267 LQLQRRLGRDGFPLIEQTFFPNPRDLFQFTKFPSVLKAGHCHGGVATARLENQSALQDAAGLVSG 331
            :::...||.:.|||:|||||||.:.:.....||.|:|.||.|.|:...::|||...||...:|:.
Human   212 IKIFHSLGPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAM 276

  Fly   332 AGNDSHCYCTIEPYIDAKFSVHIQKIGNNYKAFMRKSITGNWKTNQGSAMLEQITLTEKYKSWVD 396
            |    ..|.|.|.:||:|:.:.|||||:||||:||.||:||||.|.|||||||:.:||:|:.|||
Human   277 A----KTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVD 337

  Fly   397 EISELFGGMEVCGLSVVVAKDGREYIISACDSTFALIGDTQEEDRRQIADLVSGRMQNVCRPSMA 461
            ..||:|||:::|.:..|.:||||:|||...||:..|||:..||||:.:||||..:|..:  |...
Human   338 SCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQL--PMPG 400

  Fly   462 QTGPGKLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPMGGP----PPIPERT----------- 511
            .|.|..|...:.....|:||....:.|....|. |||.|.|||    .|.|:|:           
Human   401 GTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQ-PRPPPQGGPRQAQSPQPQRSGSPSQQRLSPQ 464

  Fly   512 -----SPAVGS-----------IGRLSSRSSISEVPEEPSSSG--------PSTVGGVRRDSQ-- 550
                 ||..||           :.|.||.||    |.:.|..|        |...|  |..||  
Human   465 GQQPLSPQSGSPQQQRSPGSPQLSRASSGSS----PNQASKPGATLASQPRPPVQG--RSTSQQG 523

  Fly   551 --------------TSQSSTISSSVSRAGQRPPQTQNSVVEDAEDTMKNLRKTFAGIFGD 596
                          .|||.|.|.|.|...||...:::   |...:|::||||:||.:|.|
Human   524 EESKKPAPPHPHLNKSQSLTNSLSTSDTSQRGTPSED---EAKAETIRNLRKSFASLFSD 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynNP_731459.2 Synapsin 151..246 CDD:280283 47/97 (48%)
ATP-grasp_4 248..452 CDD:302634 104/203 (51%)
GSK-3_bind 427..>543 CDD:283100 46/154 (30%)
SYN3NP_001356836.1 Synapsin_N 1..29 CDD:313741 10/33 (30%)
A 1..28 8/30 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..56 9/38 (24%)
B, linker 28..90 18/72 (25%)
C, actin-binding and synaptic-vesicle binding 91..399 154/347 (44%)
Synapsin 93..190 CDD:307960 47/96 (49%)
CPSase_L_D2 193..395 CDD:354326 105/205 (51%)
PRK07764 <394..536 CDD:236090 36/150 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 395..567 46/183 (25%)
J, Pro-rich linker 400..531 35/137 (26%)
E 532..580 18/50 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 229 1.000 Domainoid score I2472
eggNOG 1 0.900 - - E1_KOG3895
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68320
Inparanoid 1 1.050 375 1.000 Inparanoid score I2108
Isobase 1 0.950 - 0 Normalized mean entropy S4740
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001672
OrthoInspector 1 1.000 - - otm41936
orthoMCL 1 0.900 - - OOG6_104000
Panther 1 1.100 - - O PTHR10841
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3309
SonicParanoid 1 1.000 - - X1069
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.800

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