DRSC/TRiP Functional Genomics Resources

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Protein Alignment Syn and Syn3

DIOPT Version :10

Sequence 1:NP_731459.2 Gene:Syn / 41247 FlyBaseID:FBgn0004575 Length:1041 Species:Drosophila melanogaster
Sequence 2:NP_058805.1 Gene:Syn3 / 29130 RGDID:3799 Length:579 Species:Rattus norvegicus


Alignment Length:637 Identity:227/637 - (35%)
Similarity:328/637 - (51%) Gaps:112/637 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 VNFLKRRFSSGDLSSEVDDVDPNSLPPAARPIQDQPTKPPVAGGPPNMPPPPAPGQPAGAAPELS 78
            :|||:||.|.   ||.|.::....:|...|| :...:.|   ..|......|.|...:.::|..|
  Rat     1 MNFLRRRLSD---SSFVANLPNGYMPDLQRP-ESSSSSP---ASPATERRHPQPLAASFSSPGSS 58

  Fly    79 LSFGAGKTPATAAPAPPRGVSAPTSPAKSRESLLQRVQSLTGAARDQGASILGAAVQSATQRAPA 143
            | |.:..:.....|..|.|:..|.:|                             |....|| |.
  Rat    59 L-FSSFSSAMKQTPQAPTGLMEPPTP-----------------------------VTPVVQR-PR 92

  Fly   144 FSKDKYFTLLVLDDQNTDWSKYFRGRRLHGDFDIRVEQAEFRDITVVSSADTGPVVTMAAYRSGT 208
            .       |||:||.:|||||||.|::::||.:||||||||.::.:.:....|.:|.|...|:||
  Rat    93 I-------LLVIDDAHTDWSKYFHGKKVNGDIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGT 150

  Fly   209 RVARSFRPDFVLIRQPPRDG--SSDYRSTILGLKYGGVPSINSLHSIYQFQDKPWVFSHLLQLQR 271
            ::.|||:|||:|:||.....  :.||||.::||:|||:|::|||:|:|.|..||||||.|:::..
  Rat   151 KIVRSFKPDFILVRQHAYSMALAEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFH 215

  Fly   272 RLGRDGFPLIEQTFFPNPRDLFQFTKFPSVLKAGHCHGGVATARLENQSALQDAAGLVSGAGNDS 336
            .||.:.|||:|||||||.:.:.....||.|:|.||.|.|:...::|||...||...:|:.|    
  Rat   216 SLGPEKFPLVEQTFFPNHKPMLTAPNFPVVIKLGHAHAGMGKIKVENQHDYQDITSVVAMA---- 276

  Fly   337 HCYCTIEPYIDAKFSVHIQKIGNNYKAFMRKSITGNWKTNQGSAMLEQITLTEKYKSWVDEISEL 401
            ..|.|.|.:||:|:.:.|||||:||||:||.||:||||.|.|||||||:.:||:|:.|||..||:
  Rat   277 KTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEM 341

  Fly   402 FGGMEVCGLSVVVAKDGREYIISACDSTFALIGDTQEEDRRQIADLVSGRMQNVCRPSMAQTGPG 466
            |||:::|.:..|.:|:||:|||...||:..|||:..|||::.:||||..:|..:..|..:.  |.
  Rat   342 FGGLDICAVKAVHSKNGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKMSQLLVPGASV--PS 404

  Fly   467 KLPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPMGGP-----PPIPERTSPAVGSIGRLSSRSS 526
            .|......:..|:||....:.|....|. |||.|.|||     |..|...||   |..|||.:  
  Rat   405 PLRPWGPQTKSAKSPGQGQLGPLLGQPQ-PRPPPQGGPRQAQSPQPPRSRSP---SQQRLSPQ-- 463

  Fly   527 ISEVPEEPSSSGPS------------TVGGVRRDSQTSQSSTISS---------SVSRAGQRPPQ 570
             .:.|..|.|..|.            ..||...:..:..::::||         |.|:.|:.|.:
  Rat   464 -GQQPVSPQSGSPQQQRSPGSPQLSRASGGSSPNQASKPTASLSSHTRPPVQGRSTSQQGEEPQK 527

  Fly   571 TQN--------------------------SVVEDAEDTMKNLRKTFAGIFGD 596
            |.:                          |..|...:|::||||:||.:|.|
  Rat   528 TASPHPHLNKSQSLTNSLSTSDTSHRGTPSEDEAKAETIRNLRKSFASLFSD 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SynNP_731459.2 Synapsin 150..246 CDD:460438 47/97 (48%)
CPSase_L_D2 248..452 CDD:473076 102/203 (50%)
PHA03307 425..>700 CDD:223039 60/224 (27%)
Syn3NP_058805.1 Synapsin_N 1..29 CDD:463155 12/31 (39%)
A 1..28 10/29 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 15..84 16/102 (16%)
B, linker 28..90 15/95 (16%)
C, actin-binding and synaptic-vesicle binding 91..398 152/317 (48%)
Synapsin 92..190 CDD:460438 47/104 (45%)
Synapsin_C 192..394 CDD:308403 103/205 (50%)
PRK12323 <380..>530 CDD:481241 42/158 (27%)
J, Pro-rich linker 399..530 35/139 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 400..566 37/174 (21%)
E 531..579 10/47 (21%)

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