DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TAF1B and MEE12

DIOPT Version :9

Sequence 1:NP_001262451.1 Gene:TAF1B / 41242 FlyBaseID:FBgn0037792 Length:872 Species:Drosophila melanogaster
Sequence 2:NP_671769.1 Gene:MEE12 / 814824 AraportID:AT2G02955 Length:666 Species:Arabidopsis thaliana


Alignment Length:733 Identity:127/733 - (17%)
Similarity:249/733 - (33%) Gaps:237/733 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 MHCDVCEGTTF-QEREGFYYCVECGTQKD------------------------------------ 40
            |.|..||...| :|.:|:|||..||.|.:                                    
plant     1 MICTECENDAFDEEDDGYYYCQRCGVQVENLIQTGVDDGDLIGEGGGTQGALYNPKHRRTEPQPI 65

  Fly    41 ---QIRAVDITA-----EDNFDDTAAGRYTARTIRQKKDT--EKEDEDDIT-SWEFYNYVLRGFL 94
               |.|..|.|:     :..|:.....:...|.:::..|:  :||..:.:. :.|..:|  ..:.
plant    66 TPSQPRFTDDTSRYSQFKSQFESENGNKELPREVKRAPDSYVDKEPTEPVDFAAETLSY--ENYY 128

  Fly    95 QELLNMGAKPELKLMTLQVWAAYLDSMEVAFSKSNKTGLPKLNVRAL------PIDARII----Y 149
            .|..:...|..|.::|.|     .|::           :.|.||..|      ||..|.:    .
plant   129 DEARDRYVKAFLMMITYQ-----CDAL-----------VDKFNVTPLIIGLVGPISLRYVALSGV 177

  Fly   150 NHKTFKKG--KKGKKSTLTGDPNDERAKFRLWNRTKRNLDASGYRSHGGASESEGEQSLHLQWSM 212
            .||.:...  :..:..:..|:..|.: :.:......||:|              |::::.:.:.:
plant   178 YHKDWANNAIRDSEHQSEDGEVKDAK-RLKRHKAEPRNID--------------GKRAVTIWFGI 227

  Fly   213 RARKSLKRHMPLKHLDKHSRDSKGSMSCHSLRPRVKQLHNFDRNIYCLNIIKLYVVLGIALNMVE 277
                 ||:.|||.               .||                       |:..:|.:...
plant   228 -----LKKTMPLS---------------SSL-----------------------VISFLACHQAG 249

  Fly   278 DDIQLSDLLRFIDEEHLT-KRCMLNYLPGNVAAKGKALLKDMELSKMKDKVTNKLLRVNIACMSR 341
            ..:..:|::|:..|..|. ..|.|:.............:|...:::....::.::|....:.::.
plant   250 APVLPTDIVRWAREGKLPYLSCFLDIREQMGERSAACPVKVSIMARPFQVISAQMLEARASVIAD 314

  Fly   342 FINLSEYQKPNLHSLAERYILELALPPRLLKYVNSLLDLH--------PPTFFNAMTVHPYPRYE 398
            .|.| .....|.:.:|..||.:|::|.      :.:|||.        ||..:.:......|. .
plant   315 TIGL-PLPPVNFYGIASNYIKQLSIPE------DKILDLARLIQNWSLPPELYLSTNEQKLPS-R 371

  Fly   399 ARTMAYILYAMKLLFGLDDLK--ERNI-------------SESAAKINE-------KLLEVGGDE 441
            ...|:.::.|:::|:.::.|.  ||::             |.:|.|..|       |.||....|
plant   372 VCVMSILIVAIRMLYNINGLGVWERSLGFVNASDGDSETNSGTAEKATEFDTQELLKNLEAKYHE 436

  Fly   442 APLLFVFTEWMEFVEMRKVIVSHY----NQSFARRFGVSTRTGCQVDDILAKEWKEKEQGETF-- 500
            ..        .|.:|..|.:||:.    |:.||.....|.....::.|.|...:.:.|..|..  
plant   437 VA--------AETLESEKDLVSYLSLGKNEFFAGLEEDSPDDTYRIVDNLWNGYPKDEDIECLPK 493

  Fly   501 ---GW----------------MQGS---AAMKRQHENLTHIIETMLKDHFGESSKESMEKEHIEF 543
               .|                ..|:   ::..|::|:::..::....:|...||.|.:::..|: 
plant   494 RGRDWDDDVSLNQLSLYDSRFSDGNNPCSSSSRRNESVSIGLDLSSSEHRESSSPEKLKEIAIK- 557

  Fly   544 QPSLTPAHSYFNRILLQVSRSDGAKMKITIPDHMKVDHSARNLD--PFVLETTELSQYLSQHG-- 604
                        |::..:    |..:...||..:||    :.||  .:|.:..:.:...:.|.  
plant   558 ------------RLITDM----GDDLFCYIPPRVKV----KRLDYLQYVRKKEDGALIYAAHADY 602

  Fly   605 -LKLRVEELACQEDIQNV 621
             :.|||.....:.|::|:
plant   603 YILLRVCAKVAEIDVRNM 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TAF1BNP_001262451.1 RRN7 8..40 CDD:288614 13/27 (48%)
MEE12NP_671769.1 RRN7 1..29 CDD:288614 13/27 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR31576
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.