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Protein Alignment CAH7 and Ca5a

DIOPT Version :9

Sequence 1:	NP_001287267.1	Gene:	CAH7 / 41238	FlyBaseID:	FBgn0037788	Length:	304	Species:	Drosophila melanogaster
Sequence 2:	NP_062166.1	Gene:	Ca5a / 54233	RGDID:	2243	Length:	304	Species:	Rattus norvegicus

Alignment Length:	286	Identity:	84/286 - (29%)
Similarity:	133/286 - (46%)	Gaps:	44/286 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 VCCSVSFSWANEWGYPDLDNNQDEPFPKWGGLCDS--GKKQSPINLHVKGALKGEFDALKFENYD 72
            :|.:....|..:..|.:..:|... .|.|.|...|  |.:|||||:....::           ||
  Rat    24 LCATRPQHWRFQHSYAEKHSNCAR-HPLWTGPVSSPGGTQQSPINIQWTDSV-----------YD 76

  Fly    73 EHQKNLR----------MVNNGHSIQLSGFD---HELTLSGGALLQDFVVEQIHMHW-----W-S 118
            .....||          :.|.|:..|:. ||   .|..:|||.|...:.::|.|.||     | |
  Rat    77 PKLAPLRVSYDAASCRYLWNTGYFFQVE-FDDSCEESGISGGPLGNHYRLKQFHFHWGATDEWGS 140

  Fly   119 EHTINDIRYPLEVHIVHRNTI-YPNMTMAANFKDGIVVIGVLYHVSNTPNEAIGSIIKSLGAVKS 182
            ||.::...||.|:|:||.|:: |.|...|...::|:.||||...: ...:||:..::..|..|:.
  Rat   141 EHMVDGHAYPAELHLVHWNSMKYENYKKATTGENGLAVIGVFLKL-GAHHEALQRLVDILPEVRH 204

  Fly   183 YDSMNKPVLVADSLAVDDLVPSVENYFTYAGSLTTPTCAEAVTWIVLTETFPVTLDQVNEFKEIE 247
            .|:.    :.........|:|:..:|:||.||||||..||:|||||......|:..|::.|:.:.
  Rat   205 KDTQ----VTMGPFDPSCLLPACRDYWTYPGSLTTPPLAESVTWIVHKMPIEVSPSQLSTFRTLL 265

  Fly   248 Y----DEGKQLHNNYRELQSENNRAV 269
            :    ::.:.:.||:|.||....|.|
  Rat   266 FSGRGEDEEVMVNNFRPLQPLRGRNV 291

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.