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Protein Alignment CAH7 and Ca3

DIOPT Version :9

Sequence 1:	NP_001287267.1	Gene:	CAH7 / 41238	FlyBaseID:	FBgn0037788	Length:	304	Species:	Drosophila melanogaster
Sequence 2:	NP_062165.2	Gene:	Ca3 / 54232	RGDID:	2241	Length:	260	Species:	Rattus norvegicus

Alignment Length:	279	Identity:	80/279 - (28%)
Similarity:	117/279 - (41%)	Gaps:	53/279 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly    19 ANEWGYPDLDNNQDEPFPKWGGL--CDSGKKQSPINLHVKGALKGEFDALKFENYDEHQKNLR-- 79
            |.||||  ..:|..|   .|..|  ...|..||||.||.|..              .|..:|:
  Rat     2 AKEWGY--ASHNGPE---HWHELYPIAKGDNQSPIELHTKDI--------------RHDPSLQPW 47

  Fly    80 -----------MVNNGHSIQL---SGFDHELTLSGGALLQDFVVEQIHMHW------WSEHTIND 124
                       ::|||.:.::   ..||..: |.||.|...:.:.|.|:||      .||||::.
  Rat    48 SVSYDPGSAKTILNNGKTCRVVFDDTFDRSM-LRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDG 111

  Fly   125 IRYPLEVHIVHRNTIYPNMTMAANFKDGIVVIGVLYHVSNTPNEAIGSIIKSLGAVKSYDSMNKP 189
            ::|..|:|:||.|..|.....|....|||.|:|:...:.....| ...::.:|..:|: .....|
  Rat   112 VKYAAELHLVHWNPKYNTFGEALKQPDGIAVVGIFLKIGREKGE-FQILLDALDKIKT-KGKEAP 174

  Fly   190 VLVADSLAVDDLVPSVENYFTYAGSLTTPTCAEAVTWIVLTETFPVTLDQVNE----FKEIEYDE 250
            ....|...   |.|:..:|:||.||.|||.|.|.:.|::|.|...|:.||:.:    |...|.:.
  Rat   175 FNHFDPSC---LFPACRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAKLRSLFASAENEP 236

  Fly   251 GKQLHNNYRELQSENNRAV 269
            ...|..|:|..|....|.|
  Rat   237 PVPLVGNWRPPQPIKGRVV 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.