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Protein Alignment CAH7 and Car2

DIOPT Version :9

Sequence 1:	NP_001287267.1	Gene:	CAH7 / 41238	FlyBaseID:	FBgn0037788	Length:	304	Species:	Drosophila melanogaster
Sequence 2:	NP_062164.1	Gene:	Car2 / 54231	RGDID:	2240	Length:	260	Species:	Rattus norvegicus

Alignment Length:	287	Identity:	78/287 - (27%)
Similarity:	131/287 - (45%)	Gaps:	69/287 - (24%)

- Green bases have known domain annotations that are detailed below.

  Fly    19 ANEWGYPDLD--NNQDEPFPKWGGLCDSGKKQSPINLHVKGALKGEFDALKFENYDEHQKNLR-- 79
            ::.|||...:  .|..:.||     ..:|.:|||:::....|              :|..:|:
  Rat     2 SHHWGYSKSNGPENWHKEFP-----IANGDRQSPVDIDTGTA--------------QHDPSLQPL 47

  Fly    80 -----------MVNNGHSIQLSGFDHE--LTLSGGALLQDFVVEQIHMHW------WSEHTINDI 125
                       :||||||..:...|.:  ..|..|.|...:.:.|.|.||      .||||:|..
  Rat    48 LICYDKVASKSIVNNGHSFNVEFDDSQDFAVLKEGPLSGSYRLIQFHFHWGSSDGQGSEHTVNKK 112

  Fly   126 RYPLEVHIVHRNTIYPNMTMAANFKDGIVVIGVLYHVSNTPNEAIGSIIKSLGAVK--------- 181
            :|..|:|:||.||.|.:...|....||:.|:|:...: ...::.:..|.::|.::|
  Rat   113 KYAAELHLVHWNTKYGDFGKAVQHPDGLAVLGIFLKI-GPASQGLQKITEALHSIKTKGKRAAFA 176

  Fly   182 SYDSMNKPVLVADSLAVDDLVPSVENYFTYAGSLTTPTCAEAVTWIVLTETFPVTLDQVNEFKEI 246
            ::|..:             |:|...:|:||.||||||...|.||||||.|...|:.:|::.|:::
  Rat   177 NFDPCS-------------LLPGNLDYWTYPGSLTTPPLLECVTWIVLKEPITVSSEQMSHFRKL 228

  Fly   247 EYD-EGKQ---LHNNYRELQSENNRAV 269
            .:: ||:.   :.:|:|..|...||.:
  Rat   229 NFNSEGEAEELMVDNWRPAQPLKNRKI 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.