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Protein Alignment CAH7 and Car1

DIOPT Version :9

Sequence 1:	NP_001287267.1	Gene:	CAH7 / 41238	FlyBaseID:	FBgn0037788	Length:	304	Species:	Drosophila melanogaster
Sequence 2:	NP_001101130.1	Gene:	Car1 / 310218	RGDID:	1309780	Length:	261	Species:	Rattus norvegicus

Alignment Length:	278	Identity:	79/278 - (28%)
Similarity:	127/278 - (45%)	Gaps:	54/278 - (19%)

- Green bases have known domain annotations that are detailed below.

  Fly    21 EWGYPDLDNNQDEPFPKWGGL--CDSGKKQSPINLHVKGALKGEFDALKFENYDEHQKNLR---- 79
            :||| |..|..|:    |..|  ..:|..||||::....|              :|..:|:
  Rat     5 DWGY-DSKNGPDQ----WSKLYPIANGNNQSPIDIKTSEA--------------KHDSSLKPVSV 50

  Fly    80 ---------MVNNGHSIQLSGFD---HELTLSGGALLQDFVVEQIHMHW------WSEHTINDIR 126
                     :||.|||..:. ||   ::..|.||.|...:.:.|.|.||      .||||::..:
  Rat    51 SYNPATAKEIVNVGHSFHVV-FDDSSNQSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGAK 114

  Fly   127 YPLEVHIVHRNTI-YPNMTMAANFKDGIVVIGVLYHVSNTPNEAIGSIIKSLGAVKSYDSMNKPV 190
            |..|:|:||.|:. |.:...|.:..||:.:||||..| ...|..:..::.:|.:||: .....|.
  Rat   115 YSGELHLVHWNSAKYSSAAEAISKADGLAIIGVLMKV-GPANPNLQKVLDALSSVKT-KGKRAPF 177

  Fly   191 LVADSLAVDDLVPSVENYFTYAGSLTTPTCAEAVTWIVLTETFPVTLDQVNEFKEI----EYDEG 251
            ...|.   ..|:||..:|:||.||||.|...|:|||::..|:..::.:|:.:.:.:    |.:..
  Rat   178 TNFDP---SSLLPSSLDYWTYFGSLTHPPLHESVTWVICKESISLSPEQLAQLRGLLSSAEGEPA 239

  Fly   252 KQLHNNYRELQSENNRAV 269
            ..:.:|:|..|....|.|
  Rat   240 VPVLSNHRPPQPLKGRTV 257

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.